Sequence
atgc intronic sequence ATGC exonic sequence...ttttttttttggtactagaatatcctagtataattcttgacaggttttatcagttgcaatatttttcaaatgatgattaagagatgataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 3
ttttttttttggtactagaatatcctagtataattcttgacaggttttatcagttgcaatatttttcaaatgatgattaaga-gatgataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
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tgttgaatctcacac-acaaaatagcagaattagacttagtgttatctatttactttcttatattaataattgaaataaatttaatggttgttattttcagATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 2
ttttttttttggtactaga-atatcctagtataattcttgacaggttttatcagttgcaatatttttcaaatgat--gattaag--agatgataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
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-----cgttgaatctcacacagatcatagtagaattacaatcagtgttatctatttactttcttatattaataattgaaataaatttaatggttgttattttcagATACTTGGTTTCTTCTGTGCTGGTGTGGTACTGAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTCAAAGCTTTATCAGAATGGGGGATCCTTTTCT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 2
ttttttttttggtactagaatatcctagtataattcttgacaggttttatcagttgcaatatttttcaaatgatgattaagagat-gataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
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-----------gtacaacaaaaagctacaagaagt--tggtttgtattctcggttataactacttggcgataacatttgtgtttttggtggtt--tcccagATACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAACCAATTTGGTTTGATTAGAAATCTCACAGATGTTAAAGTTCTTTCAGAATGGGGGATTCTTTTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatcagttgcaatatttttcaaatgatgattaagagatgataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
tgataac putative branch site (score: 2)
ctgctttc CT-rich tract
aatatttttcaaatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttttttggtactagaatatcctagtataattcttgacaggttttatcagttgcaatatttttcaaatgatgattaagagatgataactgctttcagATACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaga