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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA

Basic information

species Vitis vinifera
transcript Vv00s0265g00120.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G31260.1 (Glycine max), 3'ss of exon 2
gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
                                                                      |  ||      |  | || |  ||  | |  | || |   |  |      |  |||    ||    ||        ||        || | ||||  || |||||||||||| ||||||||||||||||| ||||| |||||||| ||  | |||||||| |  || |||||||||||  ||||||| || ||| ||||| |||||||
----------------------------------------------------------------------agctagggtagtttatgaggatatggaag--gcaggtgaatattttaggttgcttaacattagtggtatgatcctgaac------attttggcttgtttgtgtttcagCATGCCCAGTATGTTACCTTCCCGTGGATGAAGCCATTGCACTTATGCCAAAGTTTCCGTCACCTTCTCCAGTACTTAAGAACTTAGCATTTATCTATGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G31680.1 (Glycine max), 3'ss of exon 2
gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
                                                                  | | |||  | ||    | | |||| || ||| ||  |   ||| |||||    |||     ||| || |          |||   |  | |  ||     |||||||| |||||| ||||| |||||||||||||||||||||||||| |   | ||||||  ||  || |||||||| ||  | |||   |||||||||| |||||||||
------------------------------------------------------------------atatatgactgtatggacgacatgggatatattttaga---tcg-cctaatgtgtatgg---tatttctactttctactgaatatttaggcttgtg-----ttatgttttagCATGCCCAGTGTGTTACCTTCCTGTGGAAGAAGCCATTGGACTGATGCCAGCATTGCCCTCACCTTCACCGGTCCTTGGGAATTTAACATATGTCTATGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 2
gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatct-atgttgtagtttcgtcctaagacatatttattta--tatcaatagatcttcaaattgctgagttcttgcttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
||||| | | ||| |   |   | |||  | |  ||||||  |       ||||      | | |  |  |||| | | |  | | |||    | | | | | |||        | | | || ||   |||  ||    |||   |   |         || | ||||  || |||||||||||| || ||||||||||||||  |||| |||||||| ||  |  ||||||| |  || |||||||||||  ||||||| || ||||||||| |||||||
gtaagatcttgtttt---actatattgtttctgcaaatatctt------ttgttaggtaattttatgaggatgtttcttgagctaggataatttatgaggatatagaaggcatatga-atattttaggttacttagtgttagtggtatgatcctgaacattttggcttgtttgtgtttcagCATGCCCGGTATGTTACCTTCCCATGGATGAAGCCATTGCACTTGTGCCAAAGTTTCCGTCACCTTCTCCAGTACTTAAGAACTTAACATTTATCTATGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G24770.1 (Glycine max), 3'ss of exon 2
gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttg--cttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
                                                                               | | || ||  | || || |   |    |     | |||     | || | |||   |   ||| |    | |||| |  | |   |   |||| ||| |||||| || || |||||||||||||||||||||||||| |   | ||||||   |  || |||||||| ||  | |||   |||||||||| |||||||||
-------------------------------------------------------------------------------gattcatgactgtatgtagggcatgagatatattttagattgcgtaatgtgtat-ggtgtttctactttgtactgaatattcgggttgttttattttttagCATGCCCGGTGTGTTACCTTCCTGTGGAAGAAGCCATTGGACTGATGCCAGCCTTGCCCTCACCTTCACCAGTCCTTGGGAATTTAACATATGTCTATGA

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagtt-cttgctt--ccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
||||| | |  ||  |   | ||| ||  || |     ||  |  |||    || ||     |||| | || |  | | |||   |  ||   |     | || |    |  || |||  || |  | ||||   ||   |  | | | |  ||  ||  |||| |    ||   |||||||||| || |||||||||||||| || ||||||||  | ||||| ||||||||   |||||||  ||| ||  | ||||| || ||||| | | | |||||
gtaagatat--ttagtcttgatttctgatttcttcc-catttttctgtttcttttctgaga-tcacta-caagattgttgttgtgaattgttgttgtgatggttgaaaagatctgagatttactgctgtata--gatgttttgtaagagtattggtttgtttgcctggtttttgatttcagCATGCCCGGTATGTTACCTTCCAGTAGAAGAAGCAGTTGCCTTGATGCCAAATGCCCCATCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcagCATGTCCAGTATGTTACCTTCCTGTGGAAGAAGCCATCGCCTTAATGCCAAAATACCCATCACCTTCTCCCTTACTTAATAATTTAACATTTGTCTATGA
                                 ttcttgcttccttat  CT-rich tract
     tatatcaata  TA-rich tract