1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccttatattaatgacttgggtggatttgatttctgagctttaatcgagtgataaatttcatctttaatgcccaattgatgtattctcttgaattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAG
species | Vitis vinifera |
transcript | Vv00s0264g00020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|110714538|gb|EE091563.1|EE091563
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|30304420|gb|CB981214.1|CB981214
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|34320290|gb|CF373044.1|CF373044
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATGGGATGTCTGCTCTACCTG ATTGATGTTATNGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|110721740|gb|EE097361.1|EE097361
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|110374711|gb|EC939634.1|EC939634
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCEST: gi|110430291|gb|EC996837.1|EC996837
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTTGTTCGTGAGAGGATCEST: gi|30304486|gb|CB981280.1|CB981280
genomic: TGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
EST: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTG ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
genomic: TTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatt ... aattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATC
gagtgataaatttcatctttaatgcccaattgatgtattctcttgaattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAG
aattgat putative branch site (score: 4)
ataaatttcatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttatattaatgacttgggtggatttgatttctgagctttaatcgagtgataaatttcatctttaatgcccaattgatgtattctcttgaattgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - -gggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgccc