Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG

Basic information

species Vitis vinifera
transcript Vv00s0252g00070.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os07g07250.1 (Oryza sativa), 3'ss of exon 1
tcctgtttttgttgttgtattgttgctaatt----tgacagaattctaggtt-tttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
|| || | ||    ||  ||||||  |  ||    | ||   || | | ||  ||| |||   | ||   |  | |||  ||| | | ||  | || |     ||||||| |  || ||||| ||| |  | |||||||||||||||||||||||||| ||||| || |||||   ||||||| | ||| || |||| ||| | |
tcttgatattccccttcaattgttaatttttgtagttaccatatgccaagtcatttaggttgctatgcagttaataatcgtattcttgttaacattgc-----agATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTTGACTGTGGGAATTACTCATTTGCTGCTCAGTACTTGCATCAATACCGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G107893_T01 (Zea mays), 3'ss of exon 4
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
||    ||  | ||     |||  |||     ||   |    | ||| || ||  ||     | ||| |  || | ||    | || ||      ||  ||||| || |  || ||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |
tcaaaattcagatggaacgttgaagctgtgcatttttattgctatagcttgttttgtgataattgctaatgaattgatcaatccttgtttaccaatg--cagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 1
tcctgtttttgttgttgtattgttgcta---atttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
 |    ||  | ||     |||  |||    ||||   |    | ||| || ||  ||  ||      ||   ||||  |||  |  ||  ||  |    ||||| || |  || ||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |
-caaaattcagatgaaacgttgaagctgtgcattttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATCGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 5
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
||    ||  | ||     |||  |||     ||   |    | ||| || ||  ||  ||      ||   ||||  |||  |  ||  ||  |    ||||| || |  || ||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |
tcaaaattcagatgaaacgttgaagctgcgcatttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATCGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G105461_T01 (Zea mays), 3'ss of exon 2
tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG---------------
          |      || | |       | | ||||  || ||  | |  |    || ||||        || |       | |  |||| |    |  ||    |  |     | || ||  | |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |               
---------ggcacagatagtctcatctcatagtcaga--tccagcctctccga---atctggccaggtgtgttctggtttgctctatttttttatatac-ttatataatatagcCTTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTGCTTTGTGCACAAACA

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G038028_T01 (Zea mays), 3'ss of exon 6
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
||    ||  | ||     |||  |||     ||   |    | ||| || ||  ||  ||      ||   ||||  |||  |  ||  ||  |    ||||| || |  || ||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
||    ||  | ||     |||  |||     ||   |    | ||| || ||  ||  ||      ||   ||||  |||  |  ||  ||  |    ||||| || |  || ||||| || ||  | |||||||||||| ||||||||||||| ||||| |||||||| || |||||||||||||| || |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G156333_T01 (Zea mays), 3'ss of exon 4
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
||    ||  | ||     |||  |||     ||   |    | ||| || ||  ||  ||      ||   ||||  |||  |  ||  ||  |    ||||| |  |  || ||||| || |   | |||||||||||||||||||||||||| ||||| |||||||| || |||| ||||||||| || |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATAGTTCCTGACCAGATTGAAGTTGTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGTTGATTACCTTTACCAGTATCGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G038313_T01 (Zea mays), 3'ss of exon 1
---tcctgtttttgttgttgtattgttgctaatt--tgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
   ||    ||  | ||   | |||  |||      |   |   || |||  | ||  ||       ||| || ||  || |||| | |||     |     |||||||| |  || ||||| || ||  | |||||||||||||||||||||||||| ||||| ||||||||  | |||||||| |||||||| |||||  | |
agatcaaaattcagatggaatgttgaagctgtgcacttttattgttatagcctcttctgtgctaaatgctaacgaa-ctaaatccttgtttaacaatg----cagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCCTGGGCTGCTGAGTACCTGTACCAGTATCGTG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
tcctgtttttgttgttgtattgttgctaatttg---acagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgac-cagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
  ||||||| || ||| ||       || | |       ||| | |   ||||  |||  ||  | | |     | ||| |      |   | | ||||  |||||||| |  |  |||||||| || || || || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| |
--ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggt--atgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G33770.1 (Glycine max), 3'ss of exon 2
tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaa---attatatcccttttttcttttctg-accagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
   || | |  ||      || |     | |   |  | || |  |   |||  | | | |||  |   |    | | | |   |      | | ||| | |||||||| |  |  ||||| || ||||| || || ||| ||||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||||| |
---tgctgtattttagaggttttaaaagaatcatcctagttttgagaagttgaattt-tgtggtatttgagttcactgtgtaaatgaggattctgctgtaacagATTGGTCCTGCACAGATCGAAGCATTGTACCAATATTCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAATACAGAG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 2
-tcctgtttttgttg-ttgtattgttgctaatttgacagaattctaggtt--tttgggtctatttggc--ttacaaaat-tatatcccttttttct---tttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
 |  || ||| | || ||   |||||  ||||||     |||  ||      ||||| | | ||||    ||    ||   | |||   | |  ||   | ||| | |||||||| |  || ||||| ||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| || || ||||||||| 
gttgtgatttggatgattaagttgtt--taattttgtgaaatgttatccagatttggttttgtttgtgtattgtggaacacaaatcttatatggcttggtgtcttatcagATTGGTCCAGACCAGATTGAGGCTTTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGCAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACAGGA

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S73_26V6.1 (Physcomitrella patens), 3'ss of exon 2
----tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
     ||   || ||   | | |||     |   ||| ||        | | | ||  | |    | || || | ||  |||   ||| |||| ||      |||| ||    || || || |||||  | || |||||||| || || |||||||| ||||||||||| || |||||  |||| ||||| ||||||||  |  
atcgaccaccttatgacatcgcatttcca-tgccttgccatctgctccgatatgtgactttggaggtctgactacatcgtatgaatttcttctcttt---gtagATCGGTTCTGATCAAATTGAGGCTCTTTACCAGTATGCGAAGTTCCAGTTTGAGTGTGGAAACTATTCAGGTGCCTCTGACTACCTCTATCAGTATCGCA

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S363_21V6.2 (Physcomitrella patens), 3'ss of exon 2
----tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
    |  | | |    | | | ||| |       |||  |      |  |  |       |||  | || |||   |  | |   || |   | ||      |||| ||    ||||| || |||||  | |||||||||||||| || |||||||| || ||||||||||| |||||  | || ||||||||| ||||  | |
attgtaatatgtagcatatcgcatt-tcaacgtcttgctacctccgtgtggatgccacattataagtctgacagtttcgtctaaattgtgattgttt---gtagATCGGTTCTGAGCAAATCGAGGCTCTGTATCAGTATGCCAAGTTCCAGTTTGAGTGCGGAAACTACTCGGGTGCATCCGACTACCTGTATGAGTATCGCG

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S9_109V6.1 (Physcomitrella patens), 3'ss of exon 2
-----tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggct--tacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
         |||| |    ||  |  |  |||  |  |   | | | | |  |||  | ||||| ||     |||  || | |    ||    |   || |   ||||||||    ||||| ||||||||  | ||||| |||||||| |||||||| || |||||||| |||||||||||  ||||||| |||||||||||  || 
acaggaaaagtttctacaatta-agagcggctt-tagggtggtaatttggccttt--gctctatctgatgaatacttaactctggtactgcaatggatttt---cagATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTCGAGTGTGGAAATTACTCTGGTGCATCTGATTATCTGTATCAGTATCGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865425|gb|DT014480.1|DT014480
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71875756|gb|DT024811.1|DT024811
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|161720928|gb|FC070668.1|FC070668
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGTTAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71874079|gb|DT023134.1|DT023134
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71857038|gb|DT006093.1|DT006093
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|161710358|gb|FC061087.1|FC061087
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAG
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAG
EST: gi|71874542|gb|DT023597.1|DT023597
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|34543038|gb|CF511270.1|CF511270
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71870368|gb|DT019423.1|DT019423
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|26261569|gb|CA812632.1|CA812632
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110711525|gb|EE088102.1|EE088102
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110377140|gb|EC942200.1|EC942200
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110712956|gb|EE088454.1|EE088454
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|34542953|gb|CF511185.1|CF511185
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110685212|gb|EE063375.1|EE063375
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71858778|gb|DT007833.1|DT007833
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|294965851|gb|GW837334.1|GW837334
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCCGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|71861236|gb|DT010291.1|DT010291
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110712683|gb|EE087943.1|EE087943
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|352768501|gb|FQ467457.1|FQ467457
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110711122|gb|EE087316.1|EE087316
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
EST: gi|110713232|gb|EE088975.1|EE088975
EST:     TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAG                         ATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT
genomic: TGAGGGCTGATAAACAGTATAACCTTCAGATGCTCAATGATCGTTACCAGgttcgctatt ... ttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
                ggcttac  putative branch site (score: 3)
                           ttatatcccttttttc  putative PPT
                   ttacaaaattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcctgtttttgttgttgtattgttgctaatttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
-cctgttt
- - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa