Sequence
atgc intronic sequence ATGC exonic sequence...ggtcctatgttttttgcttgtaacaatattcatcatgagccatctacagattcaattaagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 7
ggtcctatgttttttgcttgtaacaatat-tcatcatgagccatctacagattcaat--taagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAAT-TCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
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tagtctgtgattctgaatcatattatcgcatgaatactattcatc-atggtttcaatcgtattctgttattcacttattttgtgg-tttgtatttgata-cagGAATATGATACTCCTGAATCAGCAGTTGCAAAACTTTTTGCATCTGCCAAGACGAGTGGCACTCAATATGGGATGCCAAGCCACTGCT-TGCAAAATTTGC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41790.1 (Glycine max), 3'ss of exon 6
-ggtcctatgttttttgcttgtaacaatat-tcatcatgagccatctacagattcaattaagat--ggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
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atagtctgtgattctgaatcatattactgcatgaatactattcctc-atggattcaatcatattctgtcattcacttattttgtgg-tttgtattgat--acagGAAAATGATACTCCTGAGTCAGCAGTTGCAAAACATTTTGCATCTGCCAAGATGAGTGGCACAGAGTTCCCTCAATATGGGATGCCAAGCAACTGCTTGC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G03580.1 (Glycine max), 3'ss of exon 7
ggtcctatgttttttgcttgtaacaatattcatcatgagccatctacagattcaat--taagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAAT-TCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
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tagtctgtgattctgaatcatattaccgcatgaatagtattcctcatggattgaatcctattctgttattcacttgttttgttg-tttgtatttgata-cagGAAAGTGATACTCCTGAGTCAGCAGTTGCAAAACTTTTTGCATCTGCCAAGATGAGTGGCACTCAATATGGGATGCCAAGCCACTGCT-TGCAAAATTTGC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 4
ggtcctatgttttttgcttgtaacaatattcat-catgagccatctacagattcaattaagatggaat-ttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
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tagtctgtgattctgaatcgtattactgcacaaatactattcgt-tatggattcaatcatattctgttatttacttactttgtggtttgcatttgata-cagGAAAATGCTACTCCTGAGTCAGCAGTTGCAAAACTTTTTGCATCAGCCAAGACGAGTGGCACAGAGTTCCCTCAATATGGGATGCCAAGCCACTGCTTGC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G47480.1 (Arabidopsis thaliana), 3'ss of exon 2
ggtcctatgttttttgcttgtaacaatattcatcatgagccatct--acagattcaattaagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC---
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--------gtgagcaaatcatgagatatcttgtcatttattttcttaagaaaaacattgtatatgttgcatttcctcatcttggtattcacactgcaaacagGAAACGGATACTCCAGAAGCAGCAGTTGCTAAACTTTTTGCATTTGCCAAGAAAGATGGCATCCAA---AATGGTTATGCTCCTATTAGCCAATGCTTGCAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagattcaattaagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
tttgtttctttt CT-rich tract
atttgtttcttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtcctatgttttttgcttgtaacaatattcatcatgagccatctacagattcaattaagatggaatttcatattcttgtggatttgtttcttttaacagGAAAATGATACTCCAGAATCAGCAGTAGCTAAACTCTTTGCATCTGCCAAGAGGAATGGAGCACAATTCAGTGGCTATGGTGCTCTTACCCAGTGCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -cctatgt
- - - - - - - - - -gtaacaa
- - - - - - - - - - - - - - - catcatg
- - - - - - - - - - - - - - - - - - - gccatct