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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattggcttttgcattctttttgaggttaaatggatcaaaataatttaatttttcatatttgatattgttttgattattttctaattacctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ23041 (Selaginella moellendorffii), 3'ss of exon 1
gcattggcttttgcattctttttgaggttaaatggatcaaaataatttaatttttcatatttgatattgttttgattattttctaattacctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG
                          || ||   |     |  |||  | |||||| |   |    || ||||   |||   |   | |  | || | |||| || || |||||||| || ||||| || |||||||||||||| ||| |||| ||||||||||||
--------------------------gtaaagcagtagtgaccaatcgattttttctttcct----tttttttctctataagcctgtgaattttccatagATAATCTTTACAAACGTTGGAAACCCACACGCTCTAGGACAGAAGCCATTGACGTTTCCTCGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|33409277|gb|CF214904.1|CF214904
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|110390025|gb|EC954908.1|EC954908
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCCCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|56408495|gb|CX016747.1|CX016747
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351023886|gb|FQ423309.1|FQ423309
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCGACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|110429970|gb|EC996489.1|EC996489
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACGCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|27755104|gb|CB035859.1|CB035859
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCATAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|77584537|gb|DV221338.1|DV221338
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|27578703|gb|CB001398.1|CB001398
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|71859561|gb|DT008616.1|DT008616
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGATGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|71857747|gb|DT006802.1|DT006802
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|27578701|gb|CB001396.1|CB001396
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|110385291|gb|EC949801.1|EC949801
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|71856656|gb|DT005711.1|DT005711
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     GTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|294965073|gb|GW838876.1|GW838876
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGATGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAG                         ATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACTACTG
genomic: GGGGCGAGTTGTATCTTCGTGCTTCTGAGCTTCAGAAGGAAGGGAAAAAGgtaacataat ... ctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatttttcatatttgatattgttttgattattttctaattacctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG
                                   ttctaat  putative branch site (score: 2)
                                            cctgtct  putative PPT
     tttttcatatttgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcattggcttttgcattctttttgaggttaaatggatcaaaataatttaatttttcatatttgatattgttttgattattttctaattacctgtctacagATTATTTTCACAAACGTGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG

- - tggcttt
- - - - - - gcattct
- - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - aaaataa