Sequence
atgc intronic sequence ATGC exonic sequence...aaaccttttctattatgcttctacaaataatctgattctatatttatcaagcgtttacagttttcatttggtttaacattgattatgcaaaatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G48020.1 (Glycine max), 3'ss of exon 2
--aaaccttttctattatgcttctacaaataatctgattctatatttatcaagcgtttacagttttcatttggtttaacattgattatgcaa-aatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
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tcagaattgctctat---attctaaatggtcattttatgtaagatggtgaagataggtatattggtttattaacggaagaatttatatgttgtgaacttgcagTAACTATGTTGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATTCTATGGAGGGTGTGGTTTACACTACTTCACAGTTTGGCTTGGATG
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G38310.1 (Glycine max), 3'ss of exon 2
--aaaccttttctattatgcttctacaaataatctgattctatatttatcaagcgtttacagttttcatttggtttaacattgattatgcaa-aatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
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tcagaattgctctat---attctaaatggtgattttatgtaagatggtgaagataggtatattggtttattaacggaagaatttatatgttgtgaacttgcagTAACTATGTTGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATTCTATGGAGGGTGTGATTTACACTACTTCACAGTTTGGCTTGGATG
upper sequence: Vv00s0220g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G16270.1 (Arabidopsis thaliana), 3'ss of exon 3
aaaccttttctattatgcttctacaaataa--tctgattctatattta-tcaagcgtttacagttttcatttggtttaacattgattatgcaaaatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
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--gttggtttctttatgttttaacattcaaactcgtattccactcttactccaatttgcataatttgtttatttgttgctccttgttttcctg--tctagcagTAATTACGTTGATCATCATGTTAGTACAAAAGAGCAGATCACCCTTCAGGATACCATGGATGGCGTTGTATACTCAACGTCACAATTTGGATTAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaagcgtttacagttttcatttggtttaacattgattatgcaaaatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
tttaacattgattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaccttttctattatgcttctacaaataatctgattctatatttatcaagcgtttacagttttcatttggtttaacattgattatgcaaaatcatgcagTAACTATGTTGATCATCACGTTAGCACAAGGGAGCAGATTACACTTCAAGACACCATGGAGGGTGTGGTCTACTCTACATCACAGTTTGGACTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - -tgcttct
- - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcaa