1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attgtttgttcctctatggcccttcacccttttcctaagtgagtagatattaatttagaaattcttcttgaagtttttatttattttttcatttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCATATCGTGGTCCCGTATATTCCCTG
species | Vitis vinifera |
transcript | Vv00s0220g00070.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTG GAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCEST: gi|352787008|gb|FQ476041.1|FQ476041
genomic: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTGgttaggagtt ... atttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCC
EST: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTG GAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCEST: gi|352795190|gb|FQ477300.1|FQ477300
genomic: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTGgttaggagtt ... atttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCC
EST: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTG GAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCEST: gi|352785574|gb|FQ475577.1|FQ475577
genomic: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTGgttaggagtt ... atttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCC
EST: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTG GAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCC
genomic: GTGATGGTAGCAATGGCGATGTAGCGGTGGATCAGTATCATCGTTACCTGgttaggagtt ... atttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCC
gatattaatttagaaattcttcttgaagtttttatttattttttcatttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCATATCGTGGTCCCGTATATTCCCTG
tattaat putative branch site (score: 2)
tttttatttatttttt putative PPT
taatttagaaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttgttcctctatggcccttcacccttttcctaagtgagtagatattaatttagaaattcttcttgaagtttttatttattttttcatttgtacagGAAGATGTTGACATCATATCCAAGTTGGGATTTGGTGCTTATCGTTTTTCCATATCGTGGTCCCGTATATTCCCTG
- - - - - -ctctatg
- - - - - - - - - -cccttca
- - - - - - - - - - - - - ccctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttg