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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgaattagtttttcatttattgattttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 2
gtaagcgaattagtttttcatttattgattttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG
|||||   ||  | || |||   |||  |   |||  | ||   |   | | | || |||   |||||| ||        |  ||  |         || |||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || ||||||||||| |||||||| || |||||||||
gtaagtccat--gcttatcaacaatt--tcactttctttttgaatgtagtagtattcatt-catcgtttaatgaagagaatattgcgcct-------ttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 3
gtaagcgaattagtttttcatttattgattttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG
         | |||   |   | ||  |   |||  | |||   | ||  ||  ||  ||   || |    |  |        | ||  |   |    | |||||||| ||||||||||||||| | || | ||| || |||||||| ||||| || ||||||||||| |||||||| || |||||||||
--------gtaagtccattgct-atgaacaattt--cactttctttctaaaagtttcgttcattcatgatttggtgaagaaaatattgcgcctt----tgcagTGGCCGAAGCAGTTGAATGCTTCACTTGAGGTCGTTGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 2
-----------------------------gtaagcga--attagtttttcatttattgattttttttctcttctctcctggaatgttta--ttatgtcgtttcatctt--atttgttctgttctggtataaa-----------tttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG
                              | |   |  |||  | ||||||  | |    ||||   | ||  | | || ||  || |  ||||  |  | ||  |   |||  |  |||| | |  | |            || | |||||||||| | ||||||||||| || | |||||| |||||||| ||||| || || |||||||| || ||||| ||||||||||||
gtatatataagctgattataaatgatatcatcatttataattcatgtttcatgcaatagacttttggat-ttgacacatgtaacattgagcttattccaatgcacttgtaattcatgatgttttcgattgagaatgttgccttttgctgtggccaaagGAATTGAATGCTCCACTTGAGGTTGTTGATCCTGAGATTGCTGATATAATTGAGCTTGAAAAAGCTAGACAATGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352768987|gb|FQ468178.1|FQ468178
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAACAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352767847|gb|FQ466056.1|FQ466056
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352765219|gb|FQ465916.1|FQ465916
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|46917672|gb|CN547001.1|CN547001
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACA                         TGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA
genomic: CATCTTTACCGAATGAAGCTGTATACGAGAAGGAGAAATCTCGTGTTACAgtaagcgaat ... taaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG
                                           tataaatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcgaattagtttttcatttattgattttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG