1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gtactcttcattgatcatgttcttttccagcaggctttaagttatgatgtattatggtgtcttgatgttctaaataaattatgtttttttgaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGAAAGGCTGTTGGCTTGTTAGAGAAACCAGTCGTTCAATTCCCTAATGCT
species | Vitis vinifera |
transcript | Vv00s0207g00090.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTCCTCCGCCACTATTATTG GAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGEST: gi|110378373|gb|EC943503.1|EC943503
genomic: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTGgtaaaattct ... gaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCG
EST: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTG GAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGEST: gi|294965747|gb|GW839202.1|GW839202
genomic: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTGgtaaaattct ... gaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCG
EST: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTG GAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGEST: gi|110383372|gb|EC947743.1|EC947743
genomic: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTGgtaaaattct ... gaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCG
EST: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTG GAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCG
genomic: CTCTCTATACCAAGGGTTTCAGCTAGCATCCTTCTCCGCCACTATTATTGgtaaaattct ... gaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCG
gatgtattatggtgtcttgatgttctaaataaattatgtttttttgaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGAAAGGCTGTTGGCTTGTTAGAGAAACCAGTCGTTCAATTCCCTAATGCT
ttctaaa putative branch site (score: 2)
tttttttg putative PPT
atgttctaaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttcattgatcatgttcttttccagcaggctttaagttatgatgtattatggtgtcttgatgttctaaataaattatgtttttttgaatgcacagGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAGAAGGTCCGAAAGGCTGTTGGCTTGTTAGAGAAACCAGTCGTTCAATTCCCTAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -ctcttca
- - - - - - - -catgttc
- - - - - - - - - - - - - - -gcaggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa