Sequence
atgc intronic sequence ATGC exonic sequence...tgtttctttctttttatttacattataaaatttgatcttcttgagttccctgtaatatttactgacaatttcctttctgcttctcatatcatgtaaatagGTAGTTATCCCATTGCATCAGCTTAAGGCAATTAACCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCTGTGGACAACCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G21080.1 (Glycine max), 3'ss of exon 3
tgtttctttctttttatttacattataaaatttgatcttcttgagttccctgtaatatttactgacaatttcctttctgcttctcat-atcatgtaaatagGTAGTTATCCCATTGCATCAGCTTAAGGCAATTAACCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCTGTGGACAACCATG
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cctccttgtgatgttctcttgcctaagttgtctgatcttgaacgatattgtatc-caagtgttatttttgtctttgatatggcttattatgatgcgagtagGTAGTCATCCCATTGCTCGAGCTAAAATCAGTGAATCCTTCATCTAACACATCCAATCCTGCTGAAAAGTACATCCAGGTGATCTCTGTCGACAATCATG
upper sequence: Vv00s0199g00260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G38710.1 (Glycine max), 3'ss of exon 3
---tgtttctttctttttatttacattataaaatttgatcttcttgagttccctgtaatatttactgacaatttcctttctgcttctcatatcatgtaaatagGTAGTTATCCCATTGCATCAGCTTAAGGCAATTAACCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCTGTGGACAACCATG
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ccttgcggtgttctcttcccttgt-ttaagttgtctgatcttgaacaatattgtatc-caagtgttatttttgtccttgatatggcata-atgatgcgtgtagGTAGTCATCCCTTTACACGAGCTAAAATCAGCGAATCCTTCATCAAACACATCCAATTCTGCTGAAAAGTACATCCAGGTGATCTCGGTTGACAATCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccctgtaatatttactgacaatttcctttctgcttctcatatcatgtaaatagGTAGTTATCCCATTGCATCAGCTTAAGGCAATTAACCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCTGTGGACAACCATG
tactgac putative branch site (score: 1)
atatcatgtaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtttctttctttttatttacattataaaatttgatcttcttgagttccctgtaatatttactgacaatttcctttctgcttctcatatcatgtaaatagGTAGTTATCCCATTGCATCAGCTTAAGGCAATTAACCCTTCATCAAGCAGATCCAATCCTGCTGAAAAGTACATACAGGTTATCTCTGTGGACAACCATG
- - - - - - - - - - - - ataaaat
- - - - - - - - - - - - - - - - - - cttcttg
- - - - - - - - - - - - - - - - - - - - - -agttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa