Sequence
atgc intronic sequence ATGC exonic sequence...tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtatttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 3
tctagtc-attgttt---tacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtatttgattgata-tgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
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-ctagtttatggtttcaatatttttagtacatctttgtgttgt-atagaatgctgtttcctaatattaac---atatatgctaagtagttctgaaatccttttagGGTTCATCGAGCTGGGCCTCGTGAAAAGATATACTTTAAGCCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGAT
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 4
tctagtc-attgttttacttttaatgtttgcatttgatatg-atattatattttatctaaaggtttatttggtatttgattgata-tgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
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tctagtttatggtttcaatatttgagtacatctttgtgttgtatacaatgtagttccctaatattaac---atatatgctaagtagttctgaaatccttttagGGTTCATCGAGCTGGGCCTCGTGAAAAGATATACTATAAGCCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGAT
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 3
tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggt--atttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
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--tgatggatagaggatgtattttttcagtaagtagcactaagaactcatcaatcaaaaatgtttcttaactaatctttttcttgtataaaatcctttttagGGTTCATCGAGCTGGACCTCGGGAAAAGATATACTTTCATCCGGAAGAAGTAAAGGCTGCAATTGTTACTTGTGGGGGGCTCTGCCCTGGTCTTAATGAT
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 4
tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtatttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
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-----------------------------------------------------------------------------gtagcactaagaa-ctcctccaacaaaaatgtttcttaacc---------aat-cactttaaaccagAAGAAGTAAAGGCTGCAATTGTTACTTGTGG-GGGCTCTGCCCTGGTCTTAATGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattttatctaaaggtttatttggtatttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
cctttcc CT-rich tract
tttatttggtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtatttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT
- - - - - - - - - - - - - - gcatttg