Sequence
atgc intronic sequence ATGC exonic sequence...tccatttatcatgccaggaattgatttccatttttacaaatcactcttttctagttacaatactgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 3
tccatttatcatgccaggaattgatttccatttttacaaatcactcttttctagttacaatactgttca---cttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
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---aatgctacagttggatattgattgacgctttcattcattcaagttcaaaaaatagaagttgatgcaggatgttaattttctgtttgctttgctctttcagACAATATACTATTCATCACCTACATCTGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAACAATG
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 2
--tccatttatcatgccaggaattgatttccatttttacaaatcactcttttctagttacaatactgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
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tgcttgtgttggattttagttgatgatctt-attctattaagtttctgata-caagtgttgacagttctgaatgttaatttccgtttgctttgatctctcagACAATATACTACTCATCACCTACATCTGCTGGCGCTGAGTGCATTGATCCTGGTTGTAATTGGGTGGAACAATG
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 2
tccatttatcatgccaggaattgatttccatttttaca-aatcactcttttctagttacaat--actgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
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---aaatgctccgttggatattgattgatgctttcattcaatcaagtttaaaaaataggagttgatgctggatgttaattttctgtttgctttgctctttcagACAATATACTATTCGTCACCTACATCTGCTGGTGCAGAGTGCATTGATCCTGATTGTACATGGGTGGAACAATG
upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 2
--tccatttatcatgccaggaattgatttccatttttacaaatcactcttttctagttacaatactgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
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tgcttgtgttggattttagttgatgatctt-attctattaagtttct-tatacaagtgttgacagttctgaatgttaatttctgtttgctttgatctctcagACAATATACTATTCATCCTCTACATCTGCTGGCGCCAAGTGCATTGATCCTGGTTGTAATTGGGTGGAACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373946|gb|EC938978.1|EC938978EST: ATGAGAAGTGGCATGGATACATTAACAATAGTGACAGAGTACTTCTTAAG GTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCT
genomic: ATGAGAAGTGGCATGGATACATTAACAATAGTGACAGAGTACTTCTTAAGgtatattgcc ... gatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttctagttacaatactgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
ttctgat putative branch site (score: 3)
ttttctg CT-rich tract
acttttgtattaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccatttatcatgccaggaattgatttccatttttacaaatcactcttttctagttacaatactgttcacttttgtattaaatattttctgatatttcagGTCATATACTACTCCTCCCCTACATCCGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
-ccattta
- - - - tcatgcc
- - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acaatac