1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaattgaaagcaatcaaaagtttgtaattgatgcttctccttacactgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGGATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
species | Vitis vinifera |
transcript | Vv00s0187g00320.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATAEST: gi|161720093|gb|FC065112.1|FC065112
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAAEST: gi|30323220|gb|CD006482.1|CD006482
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAAEST: gi|27579555|gb|CB002250.1|CB002250
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAAEST: gi|110423157|gb|EC989496.1|EC989496
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAAEST: gi|32250159|gb|CD715978.1|CD715978
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAAEST: gi|30323246|gb|CD006508.1|CD006508
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
actgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGGATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
tctaaataataatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattgaaagcaatcaaaagtttgtaattgatgcttctccttacactgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGGATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -aaagcaa
- - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat