1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaattgaaagcaatcaaaagtttgtaattgatgcttctccttatgctgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
species | Vitis vinifera |
transcript | Vv00s0187g00280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGNNNNNNNCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAG GCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
genomic: CGTTTTTTTCACACCCAACCATAAAAGATTACTACAAAGCTTACATCAAGgtatgcttaa ... cattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAA
gctgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
tctaaataataatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattgaaagcaatcaaaagtttgtaattgatgcttctccttatgctgtgtctaaataataatagtgcatctattttgttgatgttctgcattttgtagGCTGTTGTGACAAGAAAGAATTCCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -aaagcaa
- - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat