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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC

Basic information

species Vitis vinifera
transcript Vv00s0187g00220.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 3'ss of exon 2
ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctc----ttgtgggttattctaatgccatttatgcacatttgcttgaccatg--gcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
   ||  |||  |  |  ||    |||  ||| | |||| |   ||         | | |  ||||  |   |   ||  |      || |||||  | |  | ||||||| ||||| || ||||| || || |   | || || || ||||||||    ||||| || |||||||||||||| ||||| ||||||||||||||||
---ctgctgaatgttttgat---ttgatactaacatgcattactccactaacgaatcgagtattatcttttgggtgttattttgacctttcttgagtacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 2
-------------------------------------------------------------------------------ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatt-tgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
                                                                                || |  ||| |    |     |      | | |    | ||  |  |  |   ||  ||  || | ||    |  ||   |   |   |    |  | |||||||||||||||| |||||||| ||||   | ||||| || |||||||||   ||||| ||||||||||||||||| ||||| ||||||||||||||||
gtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgactt-ctccagtgtatatcgtgtttacggtatctagtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G44410.1 (Glycine max), 3'ss of exon 3
-ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
     |  | |    ||    | | |   ||     |  |      ||| |    ||    |||| |  |  |  |       | ||  |  |||| | ||||||||||  |  ||  |||||| || || ||||  || ||| | || ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
gaagttagtaactttgtcatgagatttgtgcagtactttaaatgatcttgtgcc-tgaccaattcaacagtgaactgattgtttgtgtctttccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACC

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 3'ss of exon 2
--------ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattcta-atgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
        | | |  |   |||    ||    | ||  ||| ||    || |   | | |||  || |||   |  ||  |  ||||    |||| |||    | | |||| ||||| || || |||||||| |||||  | || |||||| | || ||    ||||| |||||||| |||||||| ||||||||||||||||| || |
gtctctttgttttgctagaggaagtaatctgttcaa--tagtttctgatgag---tgtattgatggatatggaatgtgagaagtatgtggttttgtttg----ttgtagGAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAATCCACAAGCTGCTATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATC

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ16947 (Selaginella moellendorffii), 3'ss of exon 2
ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
              ||          |||  |   |||    |  |||  |      |       || ||   |  || |  ||  ||||    || |||||||||||  |  | |||||||| ||||| ||||  || || |  ||||| |||||| | || || ||||||||||| ||||| ||||||||||||||| 
--------------gtaggcgagaaaaaggaaaaatgctacttttctttgcggtcaagaagaaagaacgctgatgctgtattttctcttg----tgccagGAAAATGGGCTGTTACATGTTCCAAAGGGCCAGGGCCAGAACGTCCAGGCTCAAATGCTTTCGGACCCAAACATGGCAATGGACATGATGAAGAAGAACT

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ16068 (Selaginella moellendorffii), 3'ss of exon 2
ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
                   ||  |   |   ||      |  | | ||   ||| ||   |    || |  |  |       | |  |      || |||||||||||  |  | |||||||| ||||| ||||  || || |  ||||| |||||| | || || ||||||||||| ||||| ||||||||||||||| 
------------------gtaggcgagaaaaagaaaaatgc-tacttttctttgcggtcaagaagaaagaaagctgatgctgtattttctcttgtgccagGAAAATGGGCTGTTACATGTTCCAAAGGGCCAGGGCCAGAACGTCCAGGCTCAAATGCTTTCGGACCCAAACATGGCAATGGACATGATGAAGAAGAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586760|gb|DV222522.1|DV222522
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110685864|gb|EE062959.1|EE062959
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|29783362|gb|CB349482.2|CB349482
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|77577964|gb|DV217740.1|DV217740
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71881457|gb|DT030512.1|DT030512
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110701548|gb|EE079248.1|EE079248
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAAGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|26257347|gb|CA808410.1|CA808410
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110383463|gb|EC947838.1|EC947838
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|34542613|gb|CF510845.1|CF510845
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110396217|gb|EC961898.1|EC961898
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71873805|gb|DT022860.1|DT022860
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71875866|gb|DT024921.1|DT024921
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110701549|gb|EE079249.1|EE079249
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|27585127|gb|CB007822.1|CB007822
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71867954|gb|DT017009.1|DT017009
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|294964063|gb|GW837866.1|GW837866
EST:     ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|352790842|gb|FQ475479.1|FQ475479
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATATCGAC                         GAAAATGGATTACTGCGTGTTCCTAATGGTCAGGCGCGAAATGCTCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCA
EST: gi|77577299|gb|DV217363.1|DV217363
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|352794704|gb|FQ475202.1|FQ475202
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71873978|gb|DT023033.1|DT023033
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71874611|gb|DT023666.1|DT023666
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71875857|gb|DT024912.1|DT024912
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110712770|gb|EE088107.1|EE088107
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71868316|gb|DT017371.1|DT017371
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|34542700|gb|CF510932.1|CF510932
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|33406423|gb|CF212050.1|CF212050
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110729230|gb|EE105337.1|EE105337
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|77584920|gb|DV221543.1|DV221543
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|28961974|gb|CB341013.1|CB341013
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTTAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110702874|gb|EE079227.1|EE079227
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|77582909|gb|DV220445.1|DV220445
EST:     GTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: GTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|161705722|gb|FC055801.1|FC055801
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAA-TGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110363258|gb|EC926834.1|EC926834
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71856647|gb|DT005702.1|DT005702
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|349830208|gb|FQ420468.1|FQ420468
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71875634|gb|DT024689.1|DT024689
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|26257452|gb|CA808515.1|CA808515
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|110381363|gb|EC946692.1|EC946692
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|26257101|gb|CA808164.1|CA808164
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|351013193|gb|FQ424898.1|FQ424898
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|30124839|gb|CB910178.1|CB910178
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|71885150|gb|DT034205.1|DT034205
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: gi|351016605|gb|FQ424032.1|FQ424032
EST:     ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG                         GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAATCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
             ttattctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - gggagtg
- - - - - - - - -catacac
- - - - - - - - - - - - tgaagct
- - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc