1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
species | Vitis vinifera |
transcript | Vv00s0187g00170.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|30136299|gb|CB921637.1|CB921637
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|294966792|gb|GW837811.1|GW837811
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|32250235|gb|CD716054.1|CD716054
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|30135330|gb|CB920668.1|CB920668
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|110407602|gb|EC973208.1|EC973208
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|110417816|gb|EC983901.1|EC983901
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|110712100|gb|EE089333.1|EE089333
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|110429192|gb|EC995681.1|EC995681
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|27580483|gb|CB003178.1|CB003178
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|110728851|gb|EE104791.1|EE104791
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCAEST: gi|30125541|gb|CB910880.1|CB910880
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
EST: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAG GAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
genomic: ACATTCCGGCCAAGTCGTTTCGTGCTAGGAAAGTTTACTTCAATAACGAGgtttgtgtgt ... accatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCA
cttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
ttattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcttttgagggagtgcatacactgaagctagcttgcagtgtgccttctcttgtgggttattctaatgccatttatgcacatttgcttgaccatggcagGAAAATGGATTACTGCATGTTCCTAAGGGTCAGGCGCAAAATGCTCAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC