Sequence
atgc intronic sequence ATGC exonic sequencegtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G34770.1 (Glycine max), 3'ss of exon 2
--------gtaattcaatttcttcc---tcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
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tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtaca--agGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
upper sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G35800.1 (Glycine max), 3'ss of exon 2
----gtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccg---gaaatggtaaattgtctgtgaaccatgttgta---gGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
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taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttccaatgataaacactaaatta-ttatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
upper sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G54270.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
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-------------------------gttagtctctaaatctcactcact-caatgtaaaaacagagtaaataactaatcatcat-ttgcagGTGATCCATGGGAGATGGGCAATGTTGGGAGCTTTTGGTTGCATAACCCCTGAAGTTCTTCAAAAGTGGGTCCGTGTGGACTTCAAAGAACCAGTCTGGT
upper sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S254_3V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------gtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaat----gccggaaatggtaaattgtctgt-gaaccatgt-tgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
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gtaccacttttcctgacattgattgaactactcaccattctcttgataacctaccactgggttaagggctgtgcccccacaattcaccaatatgcgctgggtgtagggattgagttgttaaattgtatgcgcagTTGATTCATGGAAGATGGGCTATGCTCGGAGCCCTTGGCTGCATCACCCCCGAGCTTCTCCAGAAGTACTCCCGTGTGACTCTCAAGGAGCCAGTATGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349808444|gb|FQ405588.1|FQ405588EST: CGGGATTATCAGCTGACCCAGAAGCCTTTGCCAGGAACAGGGCCCTTGAG GTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCA
genomic: CAGGATTATCAGCTGACCCAGAAGCCTTTGCCAGGAACAGGGCCCTTGAGgtaattcaat ... catgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
taaattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT
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