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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccccatattttgaaaaattcgtttggtttgatttgttcttgtttcgatccgtatttgaacccaatttctgtttgcaatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTACAAACTTTTCGAAGCCCCCTCGATCCAGAAGAATCCAGTGGTTTCGATG

Basic information

species Vitis vinifera
transcript Vv00s0181g00080.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581698|gb|CB004393.1|CB004393
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCC
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCC
EST: gi|161720703|gb|FC070629.1|FC070629
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
EST: gi|161713350|gb|FC063361.1|FC063361
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
EST: gi|71876591|gb|DT025646.1|DT025646
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
EST: gi|71876309|gb|DT025364.1|DT025364
EST:     ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
EST: gi|26261757|gb|CA812820.1|CA812820
EST:     ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA                         ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA
genomic: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgttcttgtttcgatccgtatttgaacccaatttctgtttgcaatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTACAAACTTTTCGAAGCCCCCTCGATCCAGAAGAATCCAGTGGTTTCGATG
 gtttgat  putative branch site (score: 5)
                      tatttgaa  TA-rich tract