Sequence
atgc intronic sequence ATGC exonic sequence...cattttacatgaagaatctgcaatagagagtcataattgttttatttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: LOC_Os12g13590.1 (Oryza sativa), 3'ss of exon 19
cattttacatgaagaatctgcaatagagagtcataattgttttatttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
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-------------------------gtgttcttttatttgctcacctaatatgtccaatacaactaagcct-aactatatgattatctgttatt--tcagAATTGTAGCCTATCTATCTCGTGTTCTCGAGGTTGCATTCAGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 19
-cattttacatgaagaatctgcaatagagagtcataatt--gttttatttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
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ggataatgcattagagtgatgctatcaatgtttatttttcaagtttatctctccatctttgtattcctaactaacaagga---tatttggttttctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 19
-cattttacatgaagaatctgcaatagagagtcataatt--gttttatttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
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agacaatgcattagagtgatgatatcaatgtttatttttcaaatttatctctccatctttgtattcctaactaacaagga---tatttggttttctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT5G12370.2 (Arabidopsis thaliana), 3'ss of exon 20
---------------------------------------------cattttacatgaaga-atctgcaatagagagtcataattgttttatttaat-tttcttgttc-cttccgga--------tgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
||| || || || | |||| || || ||||| ||| | | ||| || | || | | | || || | ||| ||| |||| ||| || ||||| |||||||| || || |||||| |||| ||||||||| | |||||||||||||||||||| |||||||||||| ||
gttaaaggcttcacctttttttttttttagtttgataagccagaagtgcttatctgtagttatacttagtagatt-tctgaaccattttacaaaatatctattgatcacgtctcaacactgtgctattcttttatctgattttttctcttgtttagGGTCGTGGCTTATCTTTCCCGGGTACTTGAGTCTGCTTTCACTGCCTTGGAAGGTCTTAATAAGCAAGCCTTCCTGACTGAACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
aattgat putative branch site (score: 4)
ttgatttcttttcttc CT-rich tract
aattgatttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattttacatgaagaatctgcaatagagagtcataattgttttatttaattttcttgttccttccggatgtcaattgatttcttttcttcccttgactagAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -catgaag
- - - - - - - - -ctgcaat