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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcactaaaataaatgaaagatccaagcacacatactggcatctttggcttgtggcattaacacaatccttttgatattaattttgtgcttcagtcccaaattctaccatctcagaaaagaaatactattccatcattgtctttcaattaagatcagtgttctaatttcggtgcagATGCAACAACTTAAAAGACAGCTGGAAGATGTTCGTTGTGAGTACGCAGAGCTATTGGCCGAGTCTGAATCCCTCAATTCAATCGAGGAAAATGGATAAT

Basic information

species Vitis vinifera
transcript Vv14s0066g00870.t01
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688876|gb|EC927274.1|EC927274
EST:     GTTATTGGAATATGAGAAAACAGAGCAAGAACTTAACCTGAAG                         ATGCAACAACTTAAAAGACAGCTGGAAGATGTTCGTTGTGAGTACGCAGAG
genomic: GTTATTGGAATATGAGAAAACAGAGCAAGAACTTAACCTGAAGgtatttcact ... ttcggtgcagATGCAACAACTTAAAAGACAGCTGGAAGATGTTCGTTGTGAGTACGCAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatactattccatcattgtctttcaattaagatcagtgttctaatttcggtgcagATGCAACAACTTAAAAGACAGCTGGAAGATGTTCGTTGTGAGTACGCAGAGCTATTGGCCGAGTCTGAATCCCTCAATTCAATCGAGGAAAATGGATAAT
                                      ttctaat  putative branch site (score: 2)
                    tttcaattaa  TA-rich tract