Sequence
atgc intronic sequence ATGC exonic sequencegtaatgttagctagaaataagtttgcttgttcctttgttattctttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: LOC_Os01g15020.2 (Oryza sativa), 3'ss of exon 19
gtaatgttagctagaaataagtttgcttgttcctttgttattctttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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------------------gtatattactctctctttgttctttggggtttaggctaatcaagggcagcgtgtaattctg---tcaattctgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTCATGCAAAATGATACAGCAGATACCAATCCTGAGGATGCAGTTCCATGCA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 20
gtaatgtta-gctagaaataagtttgcttgttcctttgtt--attctttgt---ccagaaacaatttga------------------ataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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gtaatcttaagcaaataattactttacatatttctcccttccgttctttgttttctctatgcttttcatttttttgttcctttcaatacagaacatatttctgaagttt-ttatgatt-acagGCTACTGCCAATGTTGTTCCACTGCATTGGCAACCCAACAACGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 20
gtaatgttag--ctagaaataagtttgcttgttcctttgttattctttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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gtaatgataattcttctcttatccttacttttttatatgcttgttattacttttcccctttcaatagagaacagaattctgaagttt-ttatgatt-atagGCAACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCGCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 20
gtaatgtta-gctagaaataagtttgcttgttcctttgtt--attctttg-----tccaga------aacaatttga----------ataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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gtaatcttaagcaaataattaatttacatatttcttccttcagttctttgttttctctatgcttttcatttgtttgtttctttcaatatagaacagaattctga-tgtttttatgatt-acagGCTACTGCCAATGTTGTTCCACTGCATTGGCAACCCAACAATGGTCTTCTTATGACTAATGATATCTCGGGCGTCAACCTTGAAGAAGCAGTACCTTGCA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 19
gtaatgttag--ctagaaataagtttgcttgttcctttgttattctttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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gtaatgataatccttctcttatccttactcttctatatgcttgttattacttttctgctttcagttgagagcagaattctgaagttt-ttatgatt-atagGCAACTGCTAGTGTTGTTCCACAGCATTGGCAGCCCAACAGTGGTCTTCTTATGACTAATGATGTCACGGGTGTCAACCTTGATGAAGCTGTTCCTTGCA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 18
------gtaatgtt-agctagaaataagtt--tgcttgtt-cctttgttattctttgtccagaaacaatttga---ataaaatggatttctgaatctggcta-----tgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
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gtaatcgtaaaaaagagtttgagagagcttaatgcatgctgtctgcggttttaaagagttagagatagcttaatgcatgctgtgtgcggttttatttaagtactgtttattatgcagGCAACTGCTACTGTTGTTCCTCAGCATTGGCAACCAAACAGTGGTCTTCTTATGACCAATGATGTGTCTGGTGTAAACCTTGAAAACGCTGCCCCATGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855117|gb|DT004172.1|DT004172EST: TTCAAAAACTATGGAAGTGGTTCCGTAATGATCAAAATCCAAGTGGAAAG GCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTT
genomic: TTCAAAAACTATGGAAGTGGTTCCGTAATGATCAAAATCCAAGTGGAAAGgtaatgttag ... tgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
aaacaatttgaataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgttagctagaaataagtttgcttgttcctttgttattctttgtccagaaacaatttgaataaaatggatttctgaatctggctatgttccaaagGCCACTTCCAATGTTGTTCCACAGCATTGGCAACCAAACAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCCTGAAGAAGCAGTCCCATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC