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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgtgtcttataattccagtatgatactattacttgtgtcttttgttaaaagcagccatcataattttttttttttttaatcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00150.t01
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00150.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA20G33080.1 (Glycine max), 3'ss of exon 19
--------------------gtgaatgtgtcttataattccagtatgatactattacttg-------tgtcttttgttaaaagcagccatcataattttttttttttttaatcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG
                    || |      |||  ||||||      ||  |||| ||||       | |  | ||  ||||| |   ||  | |  |||      |      | || ||||||||||||| | |||||||||||||| ||| | || ||||| ||||||||||| || |||
gtgagtttactacttatactgtcatgcaaccttggaattccccatatatcatatttcttgagcaatatttactgtgccaaaagtaataattctgagctttgcgcaatgc--cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAACCCCCCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690718|gb|EC956676.1|EC956676
EST:     GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAG                         CATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA
genomic: GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAGgtgaatgtgt ... tcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA
EST: gi|352772349|gb|FQ469874.1|FQ469874
EST:     GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAG                         CATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA
genomic: GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAGgtgaatgtgt ... tcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA
EST: gi|122691381|gb|EC975086.1|EC975086
EST:     GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAG                         CATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA
genomic: GCACGAGCAGGGAAGCTTAAGCCCAATGAATTTCAAGGAGGAACTTTCAGgtgaatgtgt ... tcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtcttttgttaaaagcagccatcataattttttttttttttaatcttatacagCATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG
                                       ttttaat  putative branch site (score: 3)
                             ttttttttttttttaa  CT-rich tract
                      atcataattttttttt  TA-rich tract