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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggaaagtttttttcatctgtttattgatggttgctcctaggctattgttctcataaaataattttcattcccagCTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTGGGCTCAACTAGTCTTGATGATCCTCCACAGTTCATTACG

Basic information

species Vitis vinifera
transcript Vv13s0019g05000.t01
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299355|gb|CB976149.1|CB976149
EST:     TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAG                         CTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG
genomic: TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAGgtatgggaaa ... tcattcccagCTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG
EST: gi|349823502|gb|FQ414912.1|FQ414912
EST:     TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAG                         CTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG
genomic: TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAGgtatgggaaa ... tcattcccagCTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG
EST: gi|110702370|gb|EE081006.1|EE081006
EST:     TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAG                         CTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG
genomic: TGGGCCAGCGCATTTTTGTATTTATTGTAGGTGGAGCTACTCGATCCGAGgtatgggaaa ... tcattcccagCTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgatggttgctcctaggctattgttctcataaaataattttcattcccagCTACGGGTATGCCACAAGCTTACAGAGAAACTAAAGAGAGAGGTTGTTCTGGGCTCAACTAGTCTTGATGATCCTCCACAGTTCATTACG
  tattgat  putative branch site (score: 3)
                                          ttttcattccc  putative PPT
                       tattgttctcataaaa  TA-rich tract