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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatataactcactcttttcagctagcaactcccaacttcttttattatgatattactttcattttaatgaccataacagtaatggttttttgttttttgtcctgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA17G07380.1 (Glycine max), 3'ss of exon 18
gtgatata----actcactcttttcagcta---gcaactcccaacttct--tttattatgatattactttcattttaatgac-cataacagt-aatggttttttgttttttgtcctgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG
|||||| |    || | | |||| || |||   | |    |  | |||   | | | |    | |   | | |||||      ||| | ||| ||       ||  |  || | ||| |   |||||||| ||| | |   | |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
gtgatacactggaccctccctttacatctatttgtattctcataattcagatgtgtaaactcaatgaatgctttttagcctttcatgagagtcaactaaaagtttctcattatgctggattgaagGATGGTTCTCTTGCTGAGCTTGTTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031975|gb|FQ460232.1|FQ460232
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|351032492|gb|FQ458857.1|FQ458857
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|349809734|gb|FQ398359.1|FQ398359
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|349811710|gb|FQ409707.1|FQ409707
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|349812955|gb|FQ411195.1|FQ411195
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTACTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|351032512|gb|FQ458877.1|FQ458877
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|22015436|gb|BQ800470.1|BQ800470
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|352786892|gb|FQ481267.1|FQ481267
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGA
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGA
EST: gi|349820047|gb|FQ404769.1|FQ404769
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTACTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
EST: gi|29784962|gb|CB341547.2|CB341547
EST:     GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG                         GATGTCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT
genomic: GAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAGgtgatataac ... tgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattttaatgaccataacagtaatggttttttgttttttgtcctgaaaaaaagGATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG
             ccataac  putative branch site (score: 3)
                            ttttttgttttttgtc  putative PPT
                            ttttttgttttttgt  TA-rich tract