Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA08G23990.1 (Glycine max), 3'ss of exon 19
gtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
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gtgagt--aattgtagtgcta-------cactagat--acttattttgacatgt----aaagtgggtcttattctgttgatctgttgccattgcagGTCTCAGAAATTTGAGGATCCAGCAGAAGGGGAAGCTGCTTTGGTTGCGAAATTTCAGAAGTTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 19
gtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
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gtgagt--agttgtagtgcta-------cactaga--aacttattttgacatgt----aaagtgggttttattctgttgatctgttgtcattgcagGTCTCAGAAATTTGAGGATCCAGCAGAAGGGGAAGCTGCTTTGGTTGCTAAATTTCAGAAGTTACACGAGGACCTGACTAATGGTTTCCGCAACCTTGAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 3'ss of exon 19
gtaagtgaa--attgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
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gtaagcaaacgacttgcttctcctcgatttctctatgactctgttacatagcgctctaataaaatg-gtctgaaacgg---aattatgggaactacagGTCTCAGAAGTTCGAAGACCCAGCAGAAGGGGAGGATACACTGGTGGAAAAATTCAAGAAATTGTACGACGATCTCAATGCTGGATTCCGTGCTTTGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22010913|gb|BQ795947.1|BQ795947EST: ACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGT GTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAA
genomic: ACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaa ... tacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
tcttaat putative branch site (score: 3)
agattttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAAATTCAGCAAGCTACATGAGGATCTGACTGCTGGTTTCCGCAACCTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT