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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctaagggaacttcgaggtttttttttacatctacactagtagcatctgctgtctaatttgtcaaatgctttcagGGACGGCAAACAATGCTGGAGCGATACTGGTTGTTGGCAGGGGGCTGGTTGTGGTTCCAAAACTGATTCATCCCTTGCCACCTCCCCTCCAATCACCTGA

Basic information

species Vitis vinifera
transcript Vv07s0104g01030.t01
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404189|gb|CF209816.1|CF209816
EST:     ATTTGCTCAGGGACAGTTGATTACACTTTTTTCTGCAACTAATTATTGTG                         GGACGGCAAACAATGCTGGAGCGATACTGGTTGTTGGCAGGGGGCTGGTTG
genomic: GTTTGCTCAGGGACAGTTGATTACACTTTTTTCTGCAACTAATTATTGTGgtaagctaag ... atgctttcagGGACGGCAAACAATGCTGGAGCGATACTGGTTGTTGGCAGGGGGCTGGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttacatctacactagtagcatctgctgtctaatttgtcaaatgctttcagGGACGGCAAACAATGCTGGAGCGATACTGGTTGTTGGCAGGGGGCTGGTTGTGGTTCCAAAACTGATTCATCCCTTGCCACCTCCCCTCCAATCACCTGA
                               gtctaat  putative branch site (score: 3)
                                              tgctttc  putative PPT
                                tctaattt  TA-rich tract