Sequence
atgc intronic sequence ATGC exonic sequence...tcctaagtctaatcactgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgttactgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 3'ss of exon 19
tcctaagtctaatcactgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgttactgagtttcaaggt-tcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG--
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-gttcagtcaaattgttatccatactctt-ttgcgcgct-tctgttcatcagaagttca----gttccttacc---tttcacgaaaccttatctctggcagGTGAAGATGCAGTACTTGTTGAAGGTTAGGTTCCATCACAAGAGGTGACTAGAAGACTTGAGG--TAGGAGTAGAAATGTAGAATTAATCAGTGGAAGTATC
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GRMZM5G831712_T02 (Zea mays), 3'ss of exon 19
--tcctaagtctaatcactgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgt---tactgagtttc----aaggttcatatct-----tgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG--
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gttcacaagtgttctttttaccctatctatccctttgcttttccagtgc--tgcgggttcataggggatgtgcacactgaccttttgtgaaaacctgtgtgtgtgtgccatcagGTGAAGATGCAGTTCTTGCTGAAGGTGCGTTTCCATCACAAGAGGTAGCTGGGAGACTAGGCAAGTAG--AGTTGGAAGGTAGAGAAGCAGAGTTAGGCGAT
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 19
tcctaagtctaatcactgcagtt-tctttaattatgctt--tgtgagaacaatacatgtccat-gtggcttgttactgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
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----aacctgagtagttggatttgtcatagataaagcccaatatgttgtattttcttatcttttgtaaattcatgcatataattgaatgtggacttttgtgcagGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA----------------------------------------------------
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA03G31820.1 (Glycine max), 3'ss of exon 20
tcctaagtctaatca---ctgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgttac-tgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGG--AACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
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-tttgagtttttttggatttatgataaagcccaaaatg--ttgtatttccttttcttcttttggtaatctcatgcatgtgattggatgtgaac-ttttgtgcagGTTAAGATGCAATTCTTATTGAAGGTGAGGTTTCATCACAAGAGATGAGGACTAGAGAGAAGTTTCTTGTTCTGGGGTGTCATCTACAC-TAAGCAGTTTT-
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 3'ss of exon 18
tcctaagtctaatcactgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgttactgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAA---GGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
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tttagaatacggctttagctattagttttgcaacatattctgtgtttgattcttttatggtgtgtacatgtctgacaaagattgctttgtctctgaacagGTGAAGTTGCAGTTCTTGTTGAAAGTAAGGTTTAAGCACAAGAGATGAGCCTGAACCAAACAAGAAGACGTCACTTC---TGTTAACTAAATGTTTTTTTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71873215|gb|DT022270.1|DT022270EST: AGTCCACTGAGTTGATGTATAATGAGTACATTGTTTATAACACAGCTCAA GTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGG
genomic: AGTCCACTGAGTTGATGTATAATGAGTACATTGTTTATAACACAGCTCAAgtaagtgata ... tcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaatacatgtccatgtggcttgttactgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
ttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctaagtctaatcactgcagtttctttaattatgctttgtgagaacaatacatgtccatgtggcttgttactgagtttcaaggttcatatcttgaacagGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGGTGAAGGAACAGGTAAATGGCTGGCAAGTGGTGTCTTGAAGAAGTATATAATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - -cactgca
- - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg