Sequence
atgc intronic sequence ATGC exonic sequence...aatataacgccgtaaatgttaacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttgaattttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 3'ss of exon 17
--------aatataacgccgtaaatgt-taacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttgaattttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
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tggaaatgaaaataacaagttaaatgagctactgtataggaactaaaa-gatgcaatccttctttgcca-taacactgaacttccttttttccat-------atggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCCTTATTCTAAGCAACATTGATAGGCTCTGGAAGGAACACTTGCAGGCAT
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 19
----aatataacgccgtaaatgttaacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttgaattttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
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tcttgaattggttcagtggccttgtcttttcacataattttctttaccatttatttctttttaaatttacctttttattacaa----ccaatgctgccccatagGATATTGTGGAGCAACAAGCAGCAGGCTTGATGAAAGAAGCAGAGCGGTTCCTAATCTTAAGCAATATCGATCGCCTGTGGAAAGAACATCTGCAGGCAC
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 19
aatataacgccgtaaatgttaacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttg----aattttattt-tagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
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-----------------gttgg-acttttagcatcatgt--gtctttctttaccatttatttctttttgaatttaccttttttattacaacaatgctgccaatagGATATTGTGGAGCAACAAGCAGCAGGCTTAATGAAAGAAGCAGAGCGGTTCCTAATCTTAAGCAATATCGATCGCCTGTGGAAAGAACATTTGCAGGCAC
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA02G01060.1 (Glycine max), 3'ss of exon 19
aatataacgccgtaaatgttaacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttg----aattttattt-tagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
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---cttctgctattaaaggttggacttttagcatcatgt--gtctttctttaccatttatttctttttgaatttaccttttttattacaacaatgctgccaatagGATATTGTGGAGCAACAAGCAGCAGGCTTAATGAAAGAAGCAGAGCGGTTCCTAATCTTAAGCAATATCGATCGCCTGTGGAAAGAACATTTGCAGGCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690052|gb|EC947180.1|EC947180EST: TGCGTGATTACCTTCATCTTCGCGGTAGAGAAGCTTACTTGCAAAAAAGG GATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTC
genomic: TGCGTGATTACCTTCATCTTCGCGGTAGAGAAGCTTACTTGCAAAAAAGGgtcagtttct ... tttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTC
EST:
gi|110720527|gb|EE096525.1|EE096525EST: TGCGTGATTACCTTCATCTTCGCGGTAGAGAAGCTTACTTGCAAAAAAGG GATATTGTGGA
genomic: TGCGTGATTACCTTCATCTTCGCGGTAGAGAAGCTTACTTGCAAAAAAGGgtcagtttct ... tttattttagGATATTGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttctttctctcagtggttttgaatatgactatgttcttgaattttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
ttttatttt CT-rich tract
tatgttcttgaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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aatataacgccgtaaatgttaacattcttaaaattaaactgatcctgcttctttctctcagtggttttgaatatgactatgttcttgaattttattttagGATATTGTGGAGAATCAAGCACCAGGTTTGATGAAGGAAGCTGAAAGGTTCCTCATTTTGAGCAACATTGATCGCCTATGGAAAGAACACTTGCAAGCAC
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- - - - - - - - - - - - - - - aaattaa