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...aatgtaattggctgtcttaagctatgagatcctcaggtttgtcattcttggcgttagaactgcatctcagtgctgttaggtgcttcttttgttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCCCTATCTTGGACAAACTTATACAAGCAAAGTTGGCAAAAACAAAGGAAC
species | Vitis vinifera |
transcript | Vv07s0005g01440.t01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|71889645|gb|DT038700.1|DT038700
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTTCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCEST: gi|30323970|gb|CD007232.1|CD007232
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACC
EST: TGAAGGAAATTGTTGAAGACGACGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGEST: gi|32267461|gb|CD716424.1|CD716424
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTG
EST: GAAGNGAA-TTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTAEST: gi|30325708|gb|CD008970.1|CD008970
genomic: GAAG-GAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTA
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|45770267|gb|CN006119.1|CN006119
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTG-TGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|22013914|gb|BQ798948.1|BQ798948
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|110428353|gb|EC994822.1|EC994822
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|30327626|gb|CD010888.1|CD010888
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32269349|gb|CD718508.1|CD718508
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|45771559|gb|CN007411.1|CN007411
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATT-TTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32269302|gb|CD718461.1|CD718461
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|110424565|gb|EC990929.1|EC990929
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32248389|gb|CD714208.1|CD714208
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32267654|gb|CD716617.1|CD716617
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32268218|gb|CD717377.1|CD717377
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32248728|gb|CD714547.1|CD714547
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCEST: gi|32270860|gb|CD720019.1|CD720019
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCNCCTGGAGCCCEST: gi|32268333|gb|CD717492.1|CD717492
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATEST: gi|22011563|gb|BQ796597.1|BQ796597
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTAT
EST: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAG GTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
genomic: TGAAGGAAATTGTTGAAGACGAAGCTGCCATTGACTTCCTGCTGGATGAGgtaagttctc ... gttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCC
tcttggcgttagaactgcatctcagtgctgttaggtgcttcttttgttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCCCTATCTTGGACAAACTTATACAAGCAAAGTTGGCAAAAACAAAGGAAC
tgcttcttttgtttt CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtaattggctgtcttaagctatgagatcctcaggtttgtcattcttggcgttagaactgcatctcagtgctgttaggtgcttcttttgttttgacagGTGATTGTTTCTGCTGCTGAGCGATGTCTGGACCCTATTCCCCTGGAGCCCCCTATCTTGGACAAACTTATACAAGCAAAGTTGGCAAAAACAAAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - tggctgt
- - - - - - - - - - -ctatgag
- - - - - - - - - - - - - - atcctca
- - - - - - - - - - - - - - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt