Sequence
atgc intronic sequence ATGC exonic sequence...tggttgctgcttctgaagcttactttgctgcatctgcatggatcatctgtttaccatatgcatcttccaatcatttgttgctgggtccttgttttaccagGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 19
tggttgctgcttctgaagcttactttgctgcatctgcatggatcatctgtttaccatatgcatcttccaatca-tttgttgctg-----ggtccttgtttta---ccagGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
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-ggagaatgtttttg---ctta--tagatacac--aaatggttagtcagtt-accgtatatatttgcctttcactttgttggagctcataatattaactttatttccagGCACTTTCCAGCAAATCAGCCTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 21
---tggttgctgcttctgaa-gcttactttgctgcatctgcatggatcatctgtttaccatatgcatcttccaatcatttgttgctgggtccttgttttaccagGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
||| ||||| | | | || | | | | | | || | ||| || | | || | | | | | | | || ||| | ||||||| || | |||||| ||||| |||||||||||||||||| | |||||||| ||||| |||||||| | || || || |||||
aaaatgtttttgcttatagatacataaatggttagttacagttaccttatatatttgcctttgacttcgccggagctcataatattaa--ctttattt--ctagGCACTTTCCACCAAATCAGCTTTTCAGAGGCATAAGCAGTGGCTGCAACATGCTAAAACACGTAGTGCAAGACATAAAATAATGAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT4G02260.3 (Arabidopsis thaliana), 3'ss of exon 19
-----------------tggttgctgcttctgaag-cttactttgctgcat---ctgcatggatca--tctgtttaccatatgcatcttccaa----tcatttgttgctgggtccttgttttacca--gGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
| | | || || | || |||| || | | |||| | | | | || || || | ||| ||||| || |||| | |||| | || ||| |||||||| |||||||||||||| || ||||| |||||||| |||||||| ||||| | ||||| | |||||||| ||||
gtttgtacctttttcccttgcttttgttttaaatttctcccttttcttcttgtcctgcttaggaaaattttgattgccttcatcatgttccacgggctctcatgttttattattattgtcacatcacagGCCCTCTCAAGTAAATCTGCTTTCCAAAGACATAAACAGTGGTTGCAACATGCCAAAACAAGGAGTGCAAGACACAAGATTATGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtttaccatatgcatcttccaatcatttgttgctgggtccttgttttaccagGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
tccttgtttt CT-rich tract
aatcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggttgctgcttctgaagcttactttgctgcatctgcatggatcatctgtttaccatatgcatcttccaatcatttgttgctgggtccttgttttaccagGCACTCTCAAGCAAATCTGCTTTCCAGAGGCATAAGCAGTGGTTACAACATGCAAAAACCCGTAGTGCCCGGCACAAGATCATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - ctgcttc
- - - - - - -tgaagct
- - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgg