Sequence
atgc intronic sequence ATGC exonic sequencegttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 3'ss of exon 8
--------------------gttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
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gttcccctctctctctctctctctcatatatgggttttcaatttttgtcttgaaagagtttctcatatttcgggtttttgaatgtgtgatgtcatgc--tagGCAATGAGTAGGGCACACAGGATTGGGCAACAAGAAACTGTTAACATATATCGTTTCGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAA
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 19
gttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
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gtattcagctgatat-----aattttattat-taatccatgaaatagttggtgcttactgttacttt---tatgtcttttagGCAATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATATATAGATTTGTTACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTA
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 19
gttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
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gtattcagctgat-----ttaattttatcat-taatcaacaaaatatttggtgtttac---tgttacttctatgttttttagGCAATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATTTATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTA
upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 20
------gttttgactggatgtcccttagtttggtcatgtagttggttatatttt-tctcaattatacttattatagctttat-gcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
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gttttgcctccaataaaatttttctacctttggattattactctttaatactaaatgttgataatgga-atcccaaccctattatatcagGCCATGAGTCGAGCGCATAGAATTGGGCAACAAGAGGTCGTGAACATTTATAGATTTGTCACTAGCAAAAGTGTTGAAGAAGAAATCCTGGAGCGCGCCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
ttatatttttctcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactagGCAATGAGTAGGGCTCATAGAATTGGGCAACGAGAAGTAGTTAACATCTACCGATTTGTTACAAGCAAAAGTGTTGAGGAAAATATTCTGAAGCGAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC