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...ttgttatcatcacttatttctctattattttgtaatatttccactgaattgctgcatttcaaacgattccttgattctgatcctgtgcatacggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAATTGACAACTCGTCTTGATTTCTTCAAGGAACGACGTTCTCAGCTCATGG
species | Vitis vinifera |
transcript | Vv06s0009g03240.t01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|161713117|gb|FC064292.1|FC064292
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|351027293|gb|FQ444542.1|FQ444542
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|349810959|gb|FQ405947.1|FQ405947
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|351048968|gb|FQ449811.1|FQ449811
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|351021838|gb|FQ437223.1|FQ437223
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAAEST: gi|349829690|gb|FQ421208.1|FQ421208
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
EST: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAG GTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
genomic: TTTGTGCTGTTGATTCTGCTTCCATGCCTTCCACCTCAAGAGCAGCCGAGgttagatcta ... acggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAA
gaattgctgcatttcaaacgattccttgattctgatcctgtgcatacggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAATTGACAACTCGTCTTGATTTCTTCAAGGAACGACGTTCTCAGCTCATGG
ttctgat putative branch site (score: 3)
atttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttatcatcacttatttctctattattttgtaatatttccactgaattgctgcatttcaaacgattccttgattctgatcctgtgcatacggttgcagGTGTTGGATTATCCCAGACAACCATCAACTGCATCTTCAGCTTTGGTAGAATTGACAACTCGTCTTGATTTCTTCAAGGAACGACGTTCTCAGCTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -catcact
- - - - - - - - - - - - - - - - - - - -tccactg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc