Sequence
atgc intronic sequence ATGC exonic sequence...caagttatttcatatttgtaacttattgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA20G34340.1 (Glycine max), 3'ss of exon 24
-caagttattt-catatttgtaactta-ttgggtattataaatgaaaatggttttttg-ggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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gtatgctattaatttgattgaaactcacttttgtatgttaaattcaagtaactacttacaacagctaattattatgtt-----tatttttgtgctg----acagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAAT
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA10G33310.1 (Glycine max), 3'ss of exon 24
-caagttattt-catatttgtaactta-ttgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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gtatgttattaatttgattgaaactcacttttgtatgttaaattcaaataactacttaca-----acaactaattattgaatgtttatttttgtgctg-acagTGAAATTATGGCTCTCGGATTTAATGAAAAATTCATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCTCTCACACTTGGAAAT
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT3G23470.1 (Arabidopsis thaliana), 3'ss of exon 13
-caagttatttcatatttgtaacttattgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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gtaagatgaaa-atattaaaaacctttcctctgttttgcttttcaggaatctgtatgttttttcatatgtccaataaaactaactattatctgcg---cagACAAATCATCGATCTTGGATTCGACGATAAATTCATAAGGACATGGGAATATTATTTCGACTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTAGAAGC
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT3G23510.1 (Arabidopsis thaliana), 3'ss of exon 21
caagttatttcatatttgtaacttattgggtattataaatgaaaatggt-tttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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-----------------gtaagataaaagatatttaaaacatttcctctgtttttgtcctgtttactcacatttctatcaaaactattattatttgtgcagACAAATCATGGCTCTTGGATTTGATGATAAATTCGTAAGGACATGGGAATATTATTTTGATTATTGCGCAGCTGGATTCAAGACTCGTACTCTTGGAGAC
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT3G23480.1 (Arabidopsis thaliana), 3'ss of exon 13
-caagttatttcatatttgtaacttattgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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gtaag--atgtcataataaaaacttttcctctgttgtgcttttcaggatttagtatgtttgttcatacgtccaacaaaactaactattatctgcg---cagACAAATCATTGATCTTGGATTCGACGAGAAATTCTTAAGGACATGGGAATATTATTTCGACTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAGAAAC
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT3G23530.1 (Arabidopsis thaliana), 3'ss of exon 21
caagttatttcatatttgtaacttattgggtattataaatgaaaatggt---tttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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-----------------gtaagataaaaaaaatatttaaagcatttcctctgtttttgttctgttta--ctcatattttcaacataactattat-tggtgcagACAAATCATGGCTCTTGGATTTGATGACAAATTCGTAAGGACGTGGGAATATTATTTTGATTATTGCGCAGCTGGATTCAAGACTCTTACTCTTGGAAAC
upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: AT3G23460.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------caagttatttcatatttgtaacttattgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
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gtaagatcaatataaaaaacatttcctctgtttt-ctctttggactttatatgtgg---cccttttatgtgt-gtttgtgctcatgtcccaaaaaaaaactattacttgtgcagACAAATCACGGATCTTGGATTCGACGATAGATTCGTAAGGACATGTGAATATTATTTCGACTATTGTGCAGCTGGCTTCAAGACTCGTACCGTAGGAGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
aattaat putative branch site (score: 3)
agttaaaattaatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caagttatttcatatttgtaacttattgggtattataaatgaaaatggttttttgggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgggg