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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcagGAGTCCCTGCAGCTGCTGATATCTATAGTTCTTCTGGCAGATCTTTCAGTCACCCTCCTTACATTGCTCCAGTTCTATTGGATTTCTCTTGGGGCTTTTC

Basic information

species Vitis vinifera
transcript Vv02s0012g00460.t01
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 19
gtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcagGAGTCCCTGCAGCTGCTGATATCTATAGTTCTTCTGGCAGATCTTTCAGTCACCCTCCTTACATTGCTCCAGTTCTATTGGATTTCTCTTGGGGCTTTTC
                                                                                      ||    ||        |||      |       | || |||    | |  |||     ||| |||| || | || || ||||||||||  |  | ||| | |||||  || |  | ||| | ||||||||||| ||||| ||||| |  ||||| |||||||| |||||| |||||| ||||||||
-------------------------------------------------------------------------------------gtagttaaattatttttaggtgcttcacctctccacaactataaattgaacatt----gtctaatatatg-acatctt-tgtttcagGACACTGTACAGTTACTGATTACTTTGATGCTTTTAGCAGATCTTTCTGTCACTCTCCTCATGTTGCTTCAGTTCTACTGGATTGCTCTTGCGGCTTTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agataattattggattattattcaacatctcatatttggatattttgtgtttcagGAGTCCCTGCAGCTGCTGATATCTATAGTTCTTCTGGCAGATCTTTCAGTCACCCTCCTTACATTGCTCCAGTTCTATTGGATTTCTCTTGGGGCTTTTC
     attattggattattat  TA-rich tract