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gtatgtcctttccgcgttgttccatgcttattgacattttctacttcttttttgagctttctgaatttaggatttgtaatcaatggtttttaatcatccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCTTGGCTAATATTTTTGGTTTTAACATGGGTGGATTGTGTTGAAGGGGACT
species | Vitis vinifera |
transcript | Vv01s0010g00950.t01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAAGCA-TGCAGCCAGGCCAAGGTTTCEST: gi|110393306|gb|EC958451.1|EC958451
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGA-GCAATGCAGCAAGGCCAAGGTTTC
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCAEST: gi|110362948|gb|EC926511.1|EC926511
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCAEST: gi|33409238|gb|CF214865.1|CF214865
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCAEST: gi|46919271|gb|CN548600.1|CN548600
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCTEST: gi|33409643|gb|CF215270.1|CF215270
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCAEST: gi|110417557|gb|EC983623.1|EC983623
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
EST: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCG GAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
genomic: GATAACTAGGAAAGAAGCTTGAGATTTGCTTCGgtatgtcctt ... ccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCT
tgagctttctgaatttaggatttgtaatcaatggtttttaatcatccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCTTGGCTAATATTTTTGGTTTTAACATGGGTGGATTGTGTTGAAGGGGACT
ttttaat putative branch site (score: 3)
tcatcctt CT-rich tract
tttttaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctttccgcgttgttccatgcttattgacattttctacttcttttttgagctttctgaatttaggatttgtaatcaatggtttttaatcatccttgtgcagGAAATTTTGCAGCTGGAAAGTGAGGAGCAATGCAGCAAGGCCAAGGTTTCTTGGCTAATATTTTTGGTTTTAACATGGGTGGATTGTGTTGAAGGGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG