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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaattgagttcaagtatttacttaaatacctgttttattctttctggacatcaaattatttttctttcttctttatttttttcctttttttctttctccaaaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACTCACTGGGGTGATTCAGGTGCCAACAATCCATCACCTGCTACACATTCTG

Basic information

species Vitis vinifera
transcript Vv00s0652g00030.t01
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716243|gb|FC066506.1|FC066506
EST:     ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
EST: gi|110724440|gb|EE100271.1|EE100271
EST:     ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
EST: gi|110731172|gb|EE109088.1|EE109088
EST:     ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
EST: gi|30301267|gb|CB978061.1|CB978061
EST:     CTTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: CTTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
EST: gi|161712847|gb|FC062022.1|FC062022
EST:     ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: ACATGGAACCCCAGCCAATTATCCTTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
EST: gi|30301485|gb|CB978279.1|CB978279
EST:     TTGCCTATATTGACCTTAATCTTCAG                         ACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT
genomic: TTGCCTATATTGACCTTAATCTTCAGgtattaattg ... aaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttctttcttctttatttttttcctttttttctttctccaaaccttacagACTTTGGCTGCGGCAAGAATGTTGACCCCATCTGGGCCAGTTGGCCAAACTCACTGGGGTGATTCAGGTGCCAACAATCCATCACCTGCTACACATTCTG
       tctttcttctttattt  CT-rich tract
         tttcttctttattttt  TA-rich tract