1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ctcattttttggtcacacagatgcctgtcagaaattgttccttttattgtttaataataacatataagatctactcattactgacttagtctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGGAGGAAGCCAACACAAGACAG
species | Vitis vinifera |
transcript | Vv19s0015g00470.t01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAG GTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGEST: gi|110694684|gb|EE072006.1|EE072006
genomic: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAGgtgtgtttac ... ctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAG
EST: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAG GTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGEST: gi|32460758|gb|CD801932.1|CD801932
genomic: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAGgtgtgtttac ... ctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAG
EST: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAG GTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAG
genomic: CTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAGgtgtgtttac ... ctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAG
attgtttaataataacatataagatctactcattactgacttagtctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGGAGGAAGCCAACACAAGACAG
tactgac putative branch site (score: 1)
tctacct putative PPT
ttaataataacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcattttttggtcacacagatgcctgtcagaaattgttccttttattgtttaataataacatataagatctactcattactgacttagtctacctacagGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGGAGGAAGCCAACACAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - tcacaca
- - - - - - - - - - - -cctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac