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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattccttctctttgttataccacatctaatccattgtcctttcctccattcaatcaaatagaaatcactataagggtgacgtgtggttttttcttttcttcaaacagGAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAG

Basic information

species Vitis vinifera
transcript Vv16s0098g00350.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133456|gb|CB918795.1|CB918795
EST:     GCCCCTTCCATCATTCTTTGAGTGCAATAGAAAGCTTGAATATATTCAGA                         GAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCAC
genomic: GCCCCTTCCATCATTCTTTGAGTGCAATAGAAAGCTTGAATATATTCAGAgtaaattcct ... cttcaaacagGAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaaatagaaatcactataagggtgacgtgtggttttttcttttcttcaaacagGAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAG
                               tggttttttcttttct  CT-rich tract
                                  ttttttcttttctt  TA-rich tract