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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcacaaaaatattttgtaaatccatcaaaacctttcatgataacattcagatgctaattgctttttggtttaatagGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT

Basic information

species Vitis vinifera
transcript Vv16s0022g02320.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031398|gb|FQ445423.1|FQ445423
EST:     AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATG                         GAAATTATGGACTTCAATTTGCGGATGACTTCTCATACACTGATTCT
genomic: AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATGgtaagttcac ... ggtttaatagGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT
EST: gi|110429629|gb|EC996127.1|EC996127
EST:     AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATG                         GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT
genomic: AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATGgtaagttcac ... ggtttaatagGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT
EST: gi|32249648|gb|CD715467.1|CD715467
EST:     AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATG                         GAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT
genomic: AGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATGgtaagttcac ... ggtttaatagGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatcaaaacctttcatgataacattcagatgctaattgctttttggtttaatagGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCT
                              tgctaat  putative branch site (score: 2)
                                       ctttttg  putative PPT
                                        tttttggtttaata  TA-rich tract