Sequence
atgc intronic sequence ATGC exonic sequence...gcttgaatcttcttctactctttcagcatcacttatttggtgctcttatgattttcattcttatgttaagatattttgttcttgtaaaactcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 18
gcttgaatcttcttctactctttcagcatcacttatttggtgctcttatgattttcattcttatgttaagatattttg---ttcttgtaaaactcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
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-tttttctggttcagggtgtttcctgtattttttcttt--ttcttttcaagtttgaatcctagctcccaaactcttaaaattccactttaaaccccttggcagGTGGAGCGGTTGCTTTCAGCTGAACAAAAGGCTACAGATTATCGATCACCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 18
--gcttgaatcttcttctactctttcagcatcacttatttggtgctcttatgattttcattcttatgttaagatattttgttcttgtaaaactcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
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gtttctggttcagggtgtttcctgtgttttttctttttctaatcaagtttgaaccctagctcccaaactcttaaatattccactt-taaaccccttg-gcagGTGGAGCGGTTGCTTTCAGCTGAACAAAAGGCTACAGATTATCGATCACCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 19
gcttgaatcttcttctactcttt-----cagcatcacttatttggtgctcttatgattttcattcttatg-ttaagatattttgttct--------------tgtaaaac--tcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
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gttagttcttttttgtgtacattacaaacagagccatgaggttcaaccctgaacaggtttaggagtcatgcttaatattttctttcccctcattttaaggactctaatatggtctttttcagGTTGATAGGCTACTTTCATCTGAGCAGAAGTCTACTGATTATAGATCAACTGATGATGGAATTGCTTCTGACCACCGTCCAACAAATGCCTGCATAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgattttcattcttatgttaagatattttgttcttgtaaaactcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
ctcttgt CT-rich tract
attttcattcttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttgaatcttcttctactctttcagcatcacttatttggtgctcttatgattttcattcttatgttaagatattttgttcttgtaaaactcttgtgcagGTGGAGCGGTTACTATCAGCTGAACAGAAGGCAACAGATTATCGGTTGCCTGATGATGGAATTGCTCCTGATCATCGGCCAACAAATGCCTGCACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - cttcttc
- - - - - - - - - - - - - catcact
- - - - - - - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaac