Sequence
atgc intronic sequence ATGC exonic sequence...tccatgtaaatctatgctgtttttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os07g23990.1 (Oryza sativa), 3'ss of exon 16
tccatgtaaatctatgctgtttttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaat--ttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
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-caacatgagtat-tgattaattaaagaagaattgagaatgtgatgaattgaagttttgaaaaataccccaagtcaatatgcttatcatagaaaaaatgcagGCTACGATCTATCAGCAAAAGGCCCTAGACATCAATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA07G06160.1 (Glycine max), 3'ss of exon 18
--tccatgtaa-atctatgctgtt-tttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
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atttcagccattgtttatgccaaaatatctattctctttttgatttagtagagtttcaggatttgatttcaattcatcaagtttt----ttacttaaatcgcagGCTACAATTTATCAACAAAAAGCTTTGGATATCAACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCT
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 18
---tccatgtaaatctatgctgtt-tttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
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ttgtttatttgcacctatgccaaaatatcttttctcttttagatttagtaaagtttctggatttgatttcaattcatcaagtttt----ttacttaaatcgcagGCTACCATTTATCAACAAAAAGCTTTGGATATCAACGAGAGGGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCT
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 18
tccatgtaaatctatgctgtttttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
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--------------gtctgtatatattatatggttagattgtgatatctttcctttatatgacaattgtgaaactaa---aagattttgttaaaa--cagGCTACAATATATCAGCAAAAGGCTTTAGACATCAATGAGAGGGAACTTGGACTTGATCATCCAGATACAATGAAGAGTTATGGTGATCTTGCTGTCTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
ttgtccc CT-rich tract
ataactatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccatgtaaatctatgctgtttttttttttttttttccttgttgcctattctcatttttccataactatatggttaattcaagagttgtcccaatttcagGCCACAATTTATCAACAAAAGGCGTTGGACATCAATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
-ccatgta
- - - - - -ctatgct
- - - - - - - - - - - - - - - - - ttccttg