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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagtggaaaaagatctcactttgatatagacttgtcattttgtttgttctcgcttcttatccttgtggtatatttattaggcatgtcttggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAATTATTGAAGCTCGTAACCGCAAGTGTCCTGTATGTTCTGCAAGTTTTG

Basic information

species Vitis vinifera
transcript Vv15s0021g02140.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71887119|gb|DT036174.1|DT036174
EST:     GGTATATGCCATGAGAGGCCAAAAGAG                         GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: GGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: gi|71889516|gb|DT038571.1|DT038571
EST:     GTATATGCCATGAGAGGCCAAAAGAG                         GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: GTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: gi|110395381|gb|EC961043.1|EC961043
EST:     AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAG                         GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: gi|349827931|gb|FQ422799.1|FQ422799
EST:     AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAG                         GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: gi|71885062|gb|DT034117.1|DT034117
EST:     GGTATATGCCATGAGAGGCCAAAAGAG                         GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: GGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctcgcttcttatccttgtggtatatttattaggcatgtcttggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAATTATTGAAGCTCGTAACCGCAAGTGTCCTGTATGTTCTGCAAGTTTTG
                                               ttcttc  CT-rich tract
                     tggtatatttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagtggaaaaagatctcactttgatatagacttgtcattttgtttgttctcgcttcttatccttgtggtatatttattaggcatgtcttggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAATTATTGAAGCTCGTAACCGCAAGTGTCCTGTATGTTCTGCAAGTTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc