Sequence
atgc intronic sequence ATGC exonic sequence...tggcaaagtagaggaacctaccattaactatgtaactccatattcaagacttggatgttttaaactgtcaataatttttcttttgctgttttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 3'ss of exon 17
-----------------------------------------------tggcaaagtaga-ggaacctaccattaactatgtaactccatattcaagacttggatgttttaaact------gtcaataatttttct---tttg---ctgttttcattt-tagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
||| ||| | | | || || | || | || | |||| || || || | | || || | || ||| | || |||| |||| ||||| || || || | || ||| ||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||||| ||| | || ||||| |
gtaattcttatgtctgaatgacttaatcattttgagaattaaaaatctggtttagtggttacagagtccctttggttctgcacttc--tgctcaaagattagacacattgagcaatataagttcatcacttctctgattctggaactgtggtcatccctagGTTCCATTCTCAAGAACTGTCTACATCGAGCAGTCTGATTTTCGTGTAAAGGATTCAAAAGATTATTATGGGCTTGCTCCTGGTAAAACAGTACTACTAA
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G032049_T01 (Zea mays), 3'ss of exon 17
----------------------------------------------tggcaaagta-gaggaacctaccatta--actatgtaactccatattcaagacttggatgttttaaactgtcaataatttttcttttgctgttttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
| | | | | || || | || | ||| ||| | || | ||| | | || | |||| |||| | | | ||| ||| |||| || || || | || ||| ||||||||| | |||||||||| | ||||| |||||||||||||||||||| || ||||| ||||| ||| | || |
gtacctctcatttccggtgtacaacacaagaacaacatcatcaacttaaaatgctgtgtgaaatctgcaataaggacttcataagttcactctatggacatcaaatcttcatactg--aatagatgtatcaaattttcttttattgcagGTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTAAAGGACTCAAAAGACTACTATGGGCTAGCCCCTGGTAAATCTGTCATGCTAA
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G048012_T01 (Zea mays), 3'ss of exon 16
--tggcaaagta----gaggaacctaccattaactatgtaactccatattcaagacttggatgttttaaactgtcaataatttttcttttgctgttttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
| | || | | | || || | || | || | | | | ||| | | || | |||| |||| | | || | || | ||| || | || || || | || ||| ||||||||| | |||||||||| | ||||| |||||||||||||||||||| || ||||| ||||| ||| | || |
cgttcccaaatgctgtgtgaaatctgcaataag--gagttaataagttcactggacatcaaatcttcatactg--aatagctgta--ttaaattttcttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAA
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA20G25120.2 (Glycine max), 3'ss of exon 18
tggcaaagtagaggaacctaccat----taactatgtaactccatattca-agacttggatgttttaaactgtcaataatttttcttttgctgttttcatt-ttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
| | || ||| | || | | | || || || ||| | || || || || ||| | || | || || || |||| | || |||||||| ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| || ||||||
---tgtattgttaagctttatcatggtattaccacttcatatgatgttggtaggcttatgt-ttgtatgcttctgat--tttatgttgttatgcatttgttcttagATTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCA
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 18
------------------------------------------------------------------------------------------tggcaaagtagaggaacctaccattaactatgtaactccatattca-agacttggatgttttaaactgtcaataatttttcttttgctgttttcatt-ttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
| | | || | ||||||| || || || || ||| |||||| | |||| | |||||| || | || || || |||| | | |||||||| ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| || ||||||
gtgaaattgaacttgtgaaaactggtatctttaggcagtgttatggttttaggaaatcttgttgcagaaactagttgtacccaacttttgtcctatgatgattcaatatcttattaacttcata---tgatgttggtaggctt--atgtttgtatgtgtc--ttattttttttgtcatgcatttgttcttagATTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCA
upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 3'ss of exon 17
tggcaaagtagaggaacctaccattaactatgtaactccatattcaagacttggatgttttaaactgtcaata-att--tttcttttgctgttttcat----tttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
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-------------------------------gtaag-ctgtatttcgcaaatacttgttttctactaacaacatattactgtttcttgatattttttcctggtctagGTACCGTTCTCTAGAGTTGTATACATTGACCAATCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTTTTGCTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404073|gb|CF209700.1|CF209700EST: CAAAGAAATGGCCTGATGCTCAAGAGGATGATGCATCTGCTTTTCACAAG GTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAG
genomic: CAAAGAAATGGCCTGATGCTCAAGAGGATGATGCATCTGCTTTTCACAAGgtaactggtt ... ttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagacttggatgttttaaactgtcaataatttttcttttgctgttttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
tttttcttttgctgtt CT-rich tract
ttttaaactgtcaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggcaaagtagaggaacctaccattaactatgtaactccatattcaagacttggatgttttaaactgtcaataatttttcttttgctgttttcattttagGTGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCA
- - - - -agaggaa
- - - - - - - - cctacca
- - - - - - - - - - - - - - - - -aactcca
- - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcaa