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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagttctctctcacaatcattataattggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaaatcctttaacaattgatcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG

Basic information

species Vitis vinifera
transcript Vv13s0156g00180.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319605|gb|CF372359.1|CF372359
EST:     TGGGGTCTTGCTGATCCATTTTGGTTTACTCGAAGCACG                         ATATTTTGCTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: TGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110391493|gb|EC956472.1|EC956472
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110418511|gb|EC984670.1|EC984670
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110361418|gb|EC924886.1|EC924886
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110429398|gb|EC995889.1|EC995889
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110367719|gb|EC931670.1|EC931670
EST:     TTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: TTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34320089|gb|CF372843.1|CF372843
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34363396|gb|CF404981.1|CF404981
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34415969|gb|CF414723.1|CF414723
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|29785895|gb|CB343236.2|CB343236
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCGAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|71866113|gb|DT015168.1|DT015168
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110372355|gb|EC936513.1|EC936513
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|71866222|gb|DT015277.1|DT015277
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110362967|gb|EC926531.1|EC926531
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|77577886|gb|DV217693.1|DV217693
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatagtatcttgggtagatggtaaaaatcctttaacaattgatcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG
                                             tcccttgc  CT-rich tract
                        taaaaatcctttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagagttctctctcacaatcattataattggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaaatcctttaacaattgatcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG

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