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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttcttttttgtttatatggaccttatttttataatgttgtttgtttgtttgtttgtttgttttttcaatacttcttatgcctctggagattaccatactatcttcatttttttttatgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGGAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GRMZM2G005493_T01 (Zea mays), 3'ss of exon 17
gtaagtttctttcttttttgtttatatggaccttatttttataatgttgtttgtttgtttgtttgtttgttttttcaatacttcttatgcctctggagattaccatactatcttcatttttttttatgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGGAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG
                                | | |    | ||||  ||||||| |   | |||          |  |     | ||  |            | || | | |  | || || | ||| |   ||||| ||||| |||||||||||||||||  | ||  || |||| ||    ||||||||||||||||||||||| ||||| || |  || ||  | || |||
-------------------------------gtcagtccc-tgatgtcatttgtttctcattctgtgaaaa-----aggatgatctctgattaaaagtggagttaaaccaacatggtattcttctgtga-tgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGAATGGACACCCTGGCCCGTGGCCTCCGCAACGCCGCCAAGCTGATCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031975|gb|FQ460232.1|FQ460232
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|351032492|gb|FQ458857.1|FQ458857
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|349809734|gb|FQ398359.1|FQ398359
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|349811710|gb|FQ409707.1|FQ409707
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|349812955|gb|FQ411195.1|FQ411195
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|351032512|gb|FQ458877.1|FQ458877
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|22015436|gb|BQ800470.1|BQ800470
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|352786892|gb|FQ481267.1|FQ481267
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCCTTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|349820047|gb|FQ404769.1|FQ404769
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
EST: gi|29784962|gb|CB341547.2|CB341547
EST:     GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATT                         GCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG
genomic: GGAGGGCTGGCCCCTGGAGGATTCAACTTTGATGCCAAATTgtaagtttct ... tgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatgcctctggagattaccatactatcttcatttttttttatgaattttagGCGAAGGGAGAGCACTGATGTTGAGGATCTCTTCATTTCTCACATTAGTGGAATGGACACCCTGGCCCGTGGTCTCCGAAATGTTGCTAAATTAATTGAG
                             tcttcattttttttta  CT-rich tract
                       atactatcttcatttt  TA-rich tract