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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatagtcggttacaatggtctttttatccttcagagttcttccgtttgttaaaatgatttcgtttcttttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAGTGTTCCTGTCTCGATGGTATTGTAACTTATCAAATTATATTGTTTCGGT

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251150|gb|CB968883.1|CB968883
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|30300210|gb|CB977004.1|CB977004
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|219555446|gb|FG985059.1|FG985059
EST:     TACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|110359216|gb|EC920349.1|EC920349
EST:     CCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|29785172|gb|CB341926.2|CB341926
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccttcagagttcttccgtttgttaaaatgatttcgtttcttttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAGTGTTCCTGTCTCGATGGTATTGTAACTTATCAAATTATATTGTTTCGGT
                                  tttcgtttctttttta  CT-rich tract
                     tttgttaaaatgattt  TA-rich tract