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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctccttttgggagcagtaagttccttggatgttaatttcaactctttactccattccctttgaaaatacaatgtcacaacttcttaatattcatggattatcattttttcatgttcatctccttttacatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTGATTGAACTAGTTGCCTGCCCTGAAACTGGGTTTGTCCACTTGTTTAGTC

Basic information

species Vitis vinifera
transcript Vv09s0002g00840.t01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781036|gb|FQ466349.1|FQ466349
EST:     GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAG                         GTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTG
genomic: GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctct ... acatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTG
EST: gi|37190359|gb|CF609708.1|CF609708
EST:     GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAG                         GTTTCTGTTTCACTAGTCCAGTCAGGTGATCCACCTGAAAATCATGATGAG
genomic: GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctct ... acatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGA-G--


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaatattcatggattatcattttttcatgttcatctccttttacatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTGATTGAACTAGTTGCCTGCCCTGAAACTGGGTTTGTCCACTTGTTTAGTC
 tcttaat  putative branch site (score: 3)
                                ttcatctccttttac  putative PPT
               attatcattttttcat  TA-rich tract