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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagGTGATGGAAATGTTCGGATTTGGAAAGATTACACACTTAGGGGTCAACAGAAACTTGTAACTGCATTCTCTTCAATCCAAGGTCATAGACCTGGTGTAAG

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 18
gtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagGTGATGGAAATGTTCGGATTTGGAAAGATTACACACTTAGGGGTCAACAGAAACTTGTAACTGCATTCTCTTCAATCCAAGGTCATAGACCTGGTGTAAG
    |  || | |  | |||||  ||| |  |    |     |    ||| |||| |||||  ||   | ||   ||||||    |||              ||| || |||||||||  ||||||||||||||||||| || || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||||| ||
---gtacttctctctactgttta-atatttttcattttattctcaaatta-ttgtcagaatattaa--tgttagggaatct----tttg-------------atgcagCTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 18
gtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagGTGATGGAAATGTTCGGATTTGGAAAGATTACACACTTAGGGGTCAACAGAAACTTGTAACTGCATTCTCTTCAATCCAAGGTCATAGACCTGGTGTAAG
                |  |||     |   ||  ||     |  ||||| |   | ||||     ||| |    | || |||  ||  |    | ||    ||| || |||||||||  ||||||||||||| || || || |||| |||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||||| ||
---------------gtacttttctctactgtttaatattattcattttattc--tcgaatt----attgtaagagtatttaatattagcgactcttatg--atgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860965|gb|DT010020.1|DT010020
EST:     ACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCAT                         GTGATGGAAATGTTCGGATTTG
genomic: ACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttg ... cattatgtagGTGATGGAAATGTTCGGATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagaatgctagattttttatgaatctaagttttactttccctacattatgtagGTGATGGAAATGTTCGGATTTGGAAAGATTACACACTTAGGGGTCAACAGAAACTTGTAACTGCATTCTCTTCAATCCAAGGTCATAGACCTGGTGTAAG
                               ttttactttccctac  CT-rich tract
             attttttatgaatcta  TA-rich tract