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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaatcttccaactatccagctgttagaaatcaacatgaaagaatcttggtttcatttgttggtcttgtttgatgtttgaatagGTTGGCATAAGTACGAGTAGGATTCATGCTCGAGGTCCAGTAGGAGTCGAAGGATTGTTGACGAGCCGATG

Basic information

species Vitis vinifera
transcript Vv08s0007g01060.t01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 19
gtatggaatcttccaactatccagctgttagaaatcaacatgaaagaatcttggtttcatttgttggtcttgtttgatgtttgaatagGTTGGCATAAGTACGAGTAGGATTCATGCTCGAGGTCCAGTAGGAGTCGAAGGATTGTTGACGAGCCGATG
|||  | |||||||    |||    | | |  | | |   |||    || |     ||   | |||||  | ||   |||| ||| ||||||| || ||||| ||| | ||||||||||||||||| |||||||| || || |||||||| | | ||||
gtaatgcatcttcccgaaatcttattatcattagtaacattgattttatttcctcatctgatcttggtactattaattgtt-gaacagGTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG

upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 18
gtatggaatcttccaactatccagctgttagaaatcaacatgaaagaatcttggtttcatttgttggtcttgtttgatgtttgaatagGTTGGCATAAGTACGAGTAGGATTCATGCTCGAGGTCCAGTAGGAGTCGAAGGATTGTTGACGAGCCGATG
|||  | |||||||    || |     |||  | | |   |||    || ||    ||   | |||||  | ||  ||  ||||| ||||||| || ||||| ||| | ||||||||||||||||| |||||||| || ||  ||||||| | | ||||
gtaatgtatcttcccgaaatgctatcattattagtgacagtgatttcattttctcatctggtcttggttatatt-aattattgaacagGTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGCTGTTGACAAACAGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaacatgaaagaatcttggtttcatttgttggtcttgtttgatgtttgaatagGTTGGCATAAGTACGAGTAGGATTCATGCTCGAGGTCCAGTAGGAGTCGAAGGATTGTTGACGAGCCGATG
                                      gtttgat  putative branch site (score: 5)
                     tttcattt  TA-rich tract